View conserved binding sites


Gene
VV01G07070
Description
name=GSVIVG01011812001;
Alias
GSVIVG01011812001;GSVIVG01011812001;GSVIVT01011812001
Binding siteNameDescriptionLocationPosition
Matrix_396AP3Not availableUpstream-37
Upstream-38
Upstream-98
Upstream-99
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream6306
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream6324
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Intron2700
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneIntron2720
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsIntron2720
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-38
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron2721
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-199
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionDownstream6324
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-39
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream6334
Motif_562-300CORETGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factorsDownstream6323
Motif_604EMHVCHORDEndosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoterDownstream6324
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-88
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisIntron2700
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-93
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-88