Matrix_104 | PI | Not available | Upstream | -177 |
| | | Upstream | -178 |
Matrix_109 | GBF3 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_113 | ABI5 | Not available | Upstream | -177 |
| | | Upstream | -178 |
| | | Upstream | -179 |
| | | Upstream | -180 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -175 |
| | | Upstream | -176 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -177 |
| | | Upstream | -178 |
Matrix_129 | ABF1 | Not available | Upstream | -178 |
| | | Upstream | -179 |
Matrix_134 | ABF1 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -175 |
Matrix_156 | POC1 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -176 |
Matrix_214 | AP1 | Not available | Upstream | -177 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -179 |
| | | Upstream | -180 |
Matrix_228 | TGA2 | Not available | Upstream | -795 |
Matrix_264 | ATAREB1 | Not available | Upstream | -176 |
| | | Upstream | -178 |
| | | Upstream | -179 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_301 | PIL5 | Not available | Upstream | -179 |
| | | Upstream | -180 |
| | | Upstream | -1670 |
Matrix_331 | GBF1 | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_332 | SPT;ALC | Not available | Upstream | -179 |
| | | Upstream | -180 |
Matrix_338 | AP2 | Not available | Upstream | -176 |
Matrix_345 | POC1 | Not available | Upstream | -175 |
| | | Upstream | -176 |
Matrix_356 | PRR5 | Not available | Upstream | -172 |
| | | Upstream | -176 |
Matrix_403 | BZR1 | Not available | Upstream | -177 |
Matrix_419 | TGA9;PAN;TGA6;bZIP65 | Not available | Upstream | -796 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -177 |
Matrix_443 | AGL15 | Not available | Upstream | -177 |
Matrix_456 | bZIP60 | Not available | Upstream | -224 |
| | | Upstream | -225 |
Matrix_47 | AtMYB77 | Not available | Upstream | -226 |
Matrix_480 | BES1 | Not available | Upstream | -178 |
| | | Upstream | -179 |
Matrix_488 | ABF1 | Not available | Upstream | -177 |
| | | Upstream | -178 |
Matrix_53 | MYC3 | Not available | Upstream | -180 |
Matrix_55 | PIF3 | Not available | Upstream | -177 |
| | | Upstream | -178 |
Matrix_68 | AtMYB77 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84 | Upstream | -226 |
Matrix_7 | PIF4 | Not available | Upstream | -180 |
| | | Upstream | -181 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -186 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -180 |
| | | Upstream | -1670 |
| | | Upstream | -1866 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -219 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -180 |
| | | Upstream | -219 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -179 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -179 |
| | | Upstream | -180 |
| | | Upstream | -186 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -219 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -178 |
| | | Upstream | -180 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -179 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -645 |
| | | Upstream | -901 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -180 |
Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | Upstream | -796 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -219 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -180 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -180 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -795 |
| | | Upstream | -797 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -181 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -187 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -795 |
| | | Upstream | -797 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -181 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -210 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -180 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -181 |
Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | Upstream | -795 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -179 |