View conserved binding sites


Gene
ST08G023660
Description
Lipase (Fragment) (AHRD V1 **-- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3
Alias
gene:Sotub08g023660;Sotub08g023660.1.1;Sotub08g023660;Sotub08g023660.1.1
Binding siteNameDescriptionLocationPosition
Matrix_48PINot availableUpstream-19
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-289
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyUpstream-169
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-168
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-673
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-169
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-169
Motif_614MYBGAHVCentral element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repressionUpstream-169
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-183
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-169
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-14