View conserved binding sites


Gene
ST06G014820
Description
Receptor-like serine/threonine-protein kinase At1g78530 (AHRD V1 *-** Y1853_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
Alias
gene:Sotub06g014820;Sotub06g014820.1.1;Sotub06g014820;Sotub06g014820.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-434
Matrix_104PINot availableUpstream-560
Matrix_109GBF3Not availableUpstream-560
Upstream-561
Upstream-562
Matrix_110ATABI4;AT3G57600Not availableUpstream-432
Matrix_113ABI5Not availableUpstream-560
Upstream-561
Upstream-562
Matrix_120BEE2Not availableUpstream-560
Upstream-561
Matrix_122ABF1;AREB2Not availableUpstream-560
Matrix_129ABF1Not availableUpstream-560
Upstream-561
Matrix_134ABF1Not availableUpstream-561
Upstream-562
Matrix_141AT3G25990Not availableUpstream-438
Matrix_145GBF4;AT5G44080Not availableUpstream-561
Upstream-562
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-557
Matrix_151ASIL1Not availableUpstream-356
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-432
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-435
Upstream-436
Matrix_156POC1Not availableUpstream-561
Upstream-562
Matrix_190ATERF1Not availableUpstream-432
Matrix_192FHY3/FAR1Not availableUpstream-558
Upstream-561
Upstream-562
Matrix_194HYH;HY5Not availableUpstream-558
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-560
Upstream-561
Matrix_214AP1Not availableUpstream-559
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-561
Upstream-562
Matrix_24POC1Not availableUpstream-557
Matrix_247PIF3Not availableUpstream-560
Upstream-561
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-432
Matrix_261ATERF-1Not availableUpstream-434
Matrix_264ATAREB1Not availableUpstream-558
Upstream-560
Upstream-561
Matrix_269FHY3/FAR1Not availableDownstream3517
Matrix_287ERF2Not availableUpstream-434
Matrix_296GBF2Not availableUpstream-560
Upstream-561
Matrix_300bZIP68;bZIP16Not availableUpstream-560
Upstream-561
Upstream-562
Matrix_301PIL5Not availableUpstream-556
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-433
Matrix_331GBF1Not availableUpstream-560
Upstream-561
Upstream-562
Matrix_332SPT;ALCNot availableUpstream-561
Upstream-562
Matrix_338AP2Not availableUpstream-558
Matrix_343AT2G33710Not availableUpstream-434
Matrix_355ERF10;ERF11Not availableUpstream-433
Matrix_356PRR5Not availableUpstream-554
Upstream-558
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-434
Matrix_38SPL14Not availableUpstream-431
Matrix_389ILR3Not availableUpstream-560
Upstream-561
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-433
Matrix_403BZR1Not availableUpstream-559
Matrix_406ATERF-7Not availableUpstream-432
Upstream-433
Matrix_409DEAR3Not availableUpstream-433
Matrix_443AGL15Not availableUpstream-559
Matrix_456bZIP60Not availableUpstream-594
Upstream-595
Matrix_462ATERF-8Not availableUpstream-432
Matrix_47AtMYB77Not availableUpstream-127
Matrix_48PINot availableUpstream-304
Matrix_480BES1Not availableUpstream-560
Upstream-561
Matrix_488ABF1Not availableUpstream-560
Matrix_493AT1G22985;AT1G71130Not availableUpstream-434
Matrix_50ATERF14;AT5G43410Not availableUpstream-433
Matrix_506DRNL;ATERF-4Not availableUpstream-435
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-439
Matrix_55PIF3Not availableUpstream-560
Matrix_7PIF4Not availableUpstream-560
Upstream-561
Upstream-562
Upstream-563
Matrix_77PRR5Not availableUpstream-559
Matrix_91CRF3Not availableUpstream-434
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-474
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream3615
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-562
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-263
Upstream-488
Upstream-508
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-562
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-561
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-561
Upstream-562
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-508
Upstream-580
Motif_244ABRE-like binding site motifNot availableUpstream-560
Upstream-562
Upstream-605
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-561
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-562
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-384
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-472
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-263
Upstream-488
Upstream-508
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-562
Upstream-607
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-577
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-434
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-562
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-578
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-560
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionDownstream3517
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-563
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream3613
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-502
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-578
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-560
Upstream-563
Upstream-605
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-442
Motif_638ABRE binding site motifNot availableUpstream-562
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-563
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-578
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-471
Upstream-513
Upstream-514
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-514
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-598
Upstream-938
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-560
Upstream-605
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-564
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-561