Matrix_101 | ERF5 | Not available | Upstream | -434 |
Matrix_104 | PI | Not available | Upstream | -560 |
Matrix_109 | GBF3 | Not available | Upstream | -560 |
| | | Upstream | -561 |
| | | Upstream | -562 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -432 |
Matrix_113 | ABI5 | Not available | Upstream | -560 |
| | | Upstream | -561 |
| | | Upstream | -562 |
Matrix_120 | BEE2 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -560 |
Matrix_129 | ABF1 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_134 | ABF1 | Not available | Upstream | -561 |
| | | Upstream | -562 |
Matrix_141 | AT3G25990 | Not available | Upstream | -438 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -561 |
| | | Upstream | -562 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -557 |
Matrix_151 | ASIL1 | Not available | Upstream | -356 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -432 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -435 |
| | | Upstream | -436 |
Matrix_156 | POC1 | Not available | Upstream | -561 |
| | | Upstream | -562 |
Matrix_190 | ATERF1 | Not available | Upstream | -432 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -558 |
| | | Upstream | -561 |
| | | Upstream | -562 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -558 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_214 | AP1 | Not available | Upstream | -559 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -561 |
| | | Upstream | -562 |
Matrix_24 | POC1 | Not available | Upstream | -557 |
Matrix_247 | PIF3 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -432 |
Matrix_261 | ATERF-1 | Not available | Upstream | -434 |
Matrix_264 | ATAREB1 | Not available | Upstream | -558 |
| | | Upstream | -560 |
| | | Upstream | -561 |
Matrix_269 | FHY3/FAR1 | Not available | Downstream | 3517 |
Matrix_287 | ERF2 | Not available | Upstream | -434 |
Matrix_296 | GBF2 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -560 |
| | | Upstream | -561 |
| | | Upstream | -562 |
Matrix_301 | PIL5 | Not available | Upstream | -556 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -433 |
Matrix_331 | GBF1 | Not available | Upstream | -560 |
| | | Upstream | -561 |
| | | Upstream | -562 |
Matrix_332 | SPT;ALC | Not available | Upstream | -561 |
| | | Upstream | -562 |
Matrix_338 | AP2 | Not available | Upstream | -558 |
Matrix_343 | AT2G33710 | Not available | Upstream | -434 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -433 |
Matrix_356 | PRR5 | Not available | Upstream | -554 |
| | | Upstream | -558 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -434 |
Matrix_38 | SPL14 | Not available | Upstream | -431 |
Matrix_389 | ILR3 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -433 |
Matrix_403 | BZR1 | Not available | Upstream | -559 |
Matrix_406 | ATERF-7 | Not available | Upstream | -432 |
| | | Upstream | -433 |
Matrix_409 | DEAR3 | Not available | Upstream | -433 |
Matrix_443 | AGL15 | Not available | Upstream | -559 |
Matrix_456 | bZIP60 | Not available | Upstream | -594 |
| | | Upstream | -595 |
Matrix_462 | ATERF-8 | Not available | Upstream | -432 |
Matrix_47 | AtMYB77 | Not available | Upstream | -127 |
Matrix_48 | PI | Not available | Upstream | -304 |
Matrix_480 | BES1 | Not available | Upstream | -560 |
| | | Upstream | -561 |
Matrix_488 | ABF1 | Not available | Upstream | -560 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -434 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -433 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -435 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -439 |
Matrix_55 | PIF3 | Not available | Upstream | -560 |
Matrix_7 | PIF4 | Not available | Upstream | -560 |
| | | Upstream | -561 |
| | | Upstream | -562 |
| | | Upstream | -563 |
Matrix_77 | PRR5 | Not available | Upstream | -559 |
Matrix_91 | CRF3 | Not available | Upstream | -434 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -474 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Downstream | 3615 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -562 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -263 |
| | | Upstream | -488 |
| | | Upstream | -508 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -562 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -561 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -561 |
| | | Upstream | -562 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -508 |
| | | Upstream | -580 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -560 |
| | | Upstream | -562 |
| | | Upstream | -605 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -561 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -562 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -384 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -472 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -263 |
| | | Upstream | -488 |
| | | Upstream | -508 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -562 |
| | | Upstream | -607 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -577 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -434 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -562 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -578 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -560 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Downstream | 3517 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -563 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Downstream | 3613 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -502 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -578 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -560 |
| | | Upstream | -563 |
| | | Upstream | -605 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -442 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -562 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -563 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -578 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -471 |
| | | Upstream | -513 |
| | | Upstream | -514 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -514 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -598 |
| | | Upstream | -938 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -560 |
| | | Upstream | -605 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -564 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -561 |