View conserved binding sites


Gene
ST02G032160
Description
Cyclin-dependent kinase inhibitor (AHRD V1 ***- Q8GUA2_TOBAC); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant
Alias
gene:Sotub02g032160;Sotub02g032160.1.1;Sotub02g032160;Sotub02g032160.1.1
Binding siteNameDescriptionLocationPosition
Matrix_113ABI5Not availableDownstream1663
Matrix_122ABF1;AREB2Not availableDownstream1664
Matrix_139OBF5Not availableUpstream-316
Matrix_166TGA4Not availableUpstream-315
Matrix_176MYB98Not availableUpstream-304
Matrix_25AP3Not availableDownstream1788
Matrix_252RAP2.6Not availableUpstream-318
Upstream-319
Matrix_264ATAREB1Not availableDownstream1664
Matrix_282bZIP60Not availableUpstream-316
Matrix_290AP2Not availableUpstream-268
Matrix_311TGA1Not availableUpstream-315
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-188
Matrix_403BZR1Not availableDownstream1666
Matrix_517ERF12Not availableUpstream-320
Upstream-321
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-334
Upstream-765
Upstream-1014
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-325
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-325
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-201
Upstream-213
Motif_33ACGTCBOXC-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding siteUpstream-318
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-325
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-189
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-317
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-319
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-317
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-202
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-182