Matrix_101 | ERF5 | Not available | Upstream | -163 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -166 |
Matrix_117 | ANT | Not available | Upstream | -537 |
Matrix_138 | RRTF1 | Not available | Upstream | -162 |
Matrix_146 | ORA47 | Not available | Upstream | -163 |
| | | Upstream | -164 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -161 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -164 |
Matrix_190 | ATERF1 | Not available | Upstream | -163 |
| | | Upstream | -164 |
| | | Upstream | -166 |
Matrix_22 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -533 |
Matrix_234 | RAP2.3 | Not available | Upstream | -163 |
| | | Upstream | -164 |
Matrix_252 | RAP2.6 | Not available | Upstream | -163 |
Matrix_261 | ATERF-1 | Not available | Upstream | -163 |
Matrix_270 | ANT | DNA binding properties of the Arabidopsis floral development protein AINTEGUMENTA | Upstream | -536 |
Matrix_272 | DEAR4 | Not available | Upstream | -163 |
Matrix_287 | ERF2 | Not available | Upstream | -163 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -162 |
Matrix_343 | AT2G33710 | Not available | Upstream | -163 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -162 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -163 |
Matrix_387 | ORA47 | Not available | Upstream | -161 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -162 |
Matrix_406 | ATERF-7 | Not available | Upstream | -161 |
Matrix_409 | DEAR3 | Not available | Upstream | -162 |
Matrix_462 | ATERF-8 | Not available | Upstream | -161 |
Matrix_473 | RRTF1 | Not available | Upstream | -163 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -163 |
Matrix_517 | ERF12 | Not available | Upstream | -166 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -164 |
Matrix_91 | CRF3 | Not available | Upstream | -163 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -681 |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Upstream | -150 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -199 |
Motif_262 | WRKY70 | Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana | Upstream | -689 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -642 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -163 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -155 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -693 |
| | | Upstream | -694 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Upstream | -171 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -699 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -151 |
| | | Upstream | -699 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -647 |