View conserved binding sites


Gene
ST01G029410
Description
Bzip-like transcription factor-like (AHRD V1 *-*- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632
Alias
gene:Sotub01g029410;Sotub01g029410.1.1;Sotub01g029410;Sotub01g029410.1.1
Binding siteNameDescriptionLocationPosition
Matrix_147ERF3;AT1G80580Not availableUpstream-98
Matrix_224ERF1Not availableUpstream-55
Matrix_234RAP2.3Not availableUpstream-53
Matrix_252RAP2.6Not availableUpstream-56
Matrix_363RAP2.3Not availableUpstream-52
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-56
Matrix_406ATERF-7Not availableUpstream-96
Matrix_409DEAR3Not availableUpstream-55
Upstream-97
Upstream-98
Matrix_414AGL15Not availableUpstream-181
Matrix_45DRNNot availableUpstream-98
Matrix_462ATERF-8Not availableUpstream-96
Matrix_473RRTF1Not availableUpstream-53
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-52
Upstream-55
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream5849
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream5849
Downstream5085
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream5849
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisDownstream5070
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-108
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream5849
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream5091
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-98
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-1034