View conserved binding sites


Gene
SL06G072710
Description
RNA polymerase sigma factor (AHRD V1 ***- Q8S9D0_GUITH)%3B contains Interpro domain(s) IPR013325 RNA polymerase sigma factor%2C region 2
Alias
Solyc06g072710.2;Solyc06g072710.2;Solyc06g072710.2.1;Solyc06g072710.2.1
Binding siteNameDescriptionLocationPosition
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream3938
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream3937
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsDownstream3923
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream3940