| Matrix_196 | TCP20;AT5G41030 | Not available | Intron | 10300 |
| | | Intron | 3830 |
| Matrix_369 | AT2G18300 | Not available | Intron | 7915 |
| Matrix_375 | AtSPL8 | Not available | Intron | 23790 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Intron | 11094 |
| | | Intron | 8795 |
| Matrix_412 | GL1 | Not available | Intron | 17937 |
| | | Intron | 13684 |
| | | Intron | 12136 |
| | | Intron | 11337 |
| | | Intron | 780 |
| Matrix_453 | EIL3 | Not available | Intron | 1070 |
| Matrix_72 | CDF2 | Not available | Intron | 23957 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1982 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -1983 |
| Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -123 |
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