View conserved binding sites


Gene
PT19G13010
Description
H2 finger protein
Alias
PAC:27025366;Potri.019G130100.1;Potri.019G130100.1;Potri.019G130100
Binding siteNameDescriptionLocationPosition
Matrix_2SEP4Not availableUpstream-251
Matrix_281TCP13Not availableUpstream-253
Matrix_310AGL3The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding proteinUpstream-251
Matrix_417SEP4Not availableUpstream-251
Matrix_94TCP5Not availableUpstream-253
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-257
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-239
Motif_180AGL2 binding site motifBinding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimerUpstream-251
Motif_198CARGATCONSENSUSCArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)Upstream-247
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-240
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-630