View conserved binding sites


Gene
PT19G08200
Description
Alkaline/neutral invertase
Alias
Potri.019G082000.2;PAC:27025926;Potri.019G082000;Potri.019G082000.2
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-1097
Upstream-1098
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-728
Matrix_147ERF3;AT1G80580Not availableUpstream-877
Upstream-878
Matrix_151ASIL1Not availableUpstream-859
Upstream-876
Upstream-877
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-886
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-876
Upstream-877
Matrix_190ATERF1Not availableUpstream-862
Upstream-863
Matrix_203GATA9;GATA12Not availableUpstream-728
Matrix_208AP1Not availableUpstream-717
Matrix_223MYB60;ATMYB31;ATMYB30;MYB94;MYBCOV1Not availableUpstream-1040
Matrix_224ERF1Not availableUpstream-861
Matrix_252RAP2.6Not availableUpstream-862
Upstream-863
Matrix_269FHY3/FAR1Not availableUpstream-321
Matrix_278AtbZIP44Not availableUpstream-1095
Matrix_331GBF1Not availableUpstream-1097
Upstream-1098
Matrix_343AT2G33710Not availableUpstream-862
Matrix_344ATERF15;AT4G18450Not availableUpstream-877
Upstream-878
Matrix_358AGL15Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo studyIntron4793
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-900
Matrix_378ATERF1Not availableUpstream-862
Matrix_387ORA47Not availableUpstream-886
Upstream-887
Matrix_39AP1Not availableUpstream-949
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-887
Matrix_414AGL15Not availableUpstream-899
Matrix_433ATERF1Not availableUpstream-876
Upstream-877
Matrix_438AtbZIP63Not availableUpstream-1094
Upstream-1095
Matrix_448ATERF6Not availableUpstream-876
Upstream-877
Matrix_45DRNNot availableUpstream-877
Upstream-878
Matrix_456bZIP60Not availableUpstream-1096
Matrix_462ATERF-8Not availableUpstream-877
Upstream-878
Matrix_473RRTF1Not availableUpstream-862
Matrix_478AT1G01250Not availableUpstream-888
Matrix_48PINot availableUpstream-951
Upstream-995
Matrix_484ATERF13Not availableUpstream-877
Matrix_5AT5G51190;ERF104Not availableUpstream-877
Upstream-878
Matrix_517ERF12Not availableUpstream-862
Upstream-863
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-888
Matrix_80BIM1Not availableUpstream-1062
Matrix_92AT1G33760Not availableUpstream-887
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-1054
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-977
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-980
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1064
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1053
Upstream-1057
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACDownstream5439
Motif_244ABRE-like binding site motifNot availableUpstream-1098
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-918
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream5343
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1098
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-1097
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-865
Upstream-1089
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-888
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-1097
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-41
Upstream-467
Upstream-663
Upstream-787
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-1097
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-874
Upstream-879
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-1097
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-889
Motif_476XYLATcis-element identified among the promoters of the core xylem gene setUpstream-695
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-1156
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneDownstream5487
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-907
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-1097
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-889
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-694
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-889
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-967
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-776
Upstream-1044
Upstream-1157
Upstream-1158
Upstream-1177
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-694
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-776
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-1099
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-992
Upstream-994
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-936