View conserved binding sites


Gene
PT17G00030
Description
Probable methylenetetrahydrofolate reductase
Alias
PAC:26984752;Potri.017G000300;Potri.017G000300.1;Potri.017G000300.1
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-162
Upstream-969
Matrix_130TCP16Not availableUpstream-983
Matrix_144AT5G08330;AT5G23280Not availableUpstream-983
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-162
Upstream-901
Upstream-911
Upstream-975
Upstream-976
Upstream-994
Upstream-995
Upstream-1001
Upstream-1002
Upstream-1003
Matrix_184AGL15Not availableUpstream-234
Upstream-237
Upstream-240
Matrix_195GATA2;GATA4Not availableIntron682
Matrix_196TCP20;AT5G41030Not availableUpstream-916
Upstream-981
Upstream-982
Upstream-985
Upstream-986
Matrix_211MYB3Not availableUpstream-972
Matrix_216TCP16Not availableUpstream-983
Matrix_232TCP23Not availableUpstream-984
Upstream-985
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-78
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-983
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-982
Upstream-983
Upstream-984
Matrix_281TCP13Not availableUpstream-985
Upstream-986
Matrix_294MEE35Not availableUpstream-985
Upstream-986
Matrix_297TCP15Not availableUpstream-984
Upstream-985
Matrix_315MYB111Not availableUpstream-162
Upstream-972
Matrix_348AT5G51910Not availableUpstream-983
Upstream-984
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-163
Upstream-972
Upstream-973
Matrix_385DEAR4Not availableUpstream-77
Matrix_394DREB_UNot availableUpstream-77
Matrix_40TCP2Not availableUpstream-983
Upstream-984
Matrix_401MYB55Not availableUpstream-162
Upstream-972
Upstream-975
Upstream-976
Matrix_42AT2G45680Not availableUpstream-983
Upstream-984
Matrix_452MYB46Not availableUpstream-158
Upstream-1372
Matrix_455MYB111Not availableUpstream-162
Upstream-972
Matrix_478AT1G01250Not availableUpstream-78
Matrix_496ATMYB15Not availableUpstream-162
Matrix_507TCP3Not availableUpstream-984
Upstream-985
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-162
Upstream-994
Upstream-995
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-78
Matrix_82TCP17Not availableUpstream-985
Upstream-986
Matrix_92AT1G33760Not availableUpstream-77
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-977
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-163
Upstream-380
Upstream-579
Upstream-972
Upstream-996
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-972
Upstream-996
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-164
Upstream-583
Upstream-957
Upstream-972
Upstream-997
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-138
Motif_419MYB4 binding site motifNot availableUpstream-972
Upstream-996
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-163
Upstream-972
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-78
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataIntron4360
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-162
Upstream-868
Upstream-972
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-78
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-986
Motif_61PALBOXLPCBox L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activationUpstream-972
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-78
Upstream-1394
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-162
Upstream-868
Upstream-972
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-142
Motif_8PALBOXPPCBox P; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activationUpstream-865