Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -162 |
| | | Upstream | -969 |
Matrix_130 | TCP16 | Not available | Upstream | -983 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -983 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -162 |
| | | Upstream | -901 |
| | | Upstream | -911 |
| | | Upstream | -975 |
| | | Upstream | -976 |
| | | Upstream | -994 |
| | | Upstream | -995 |
| | | Upstream | -1001 |
| | | Upstream | -1002 |
| | | Upstream | -1003 |
Matrix_184 | AGL15 | Not available | Upstream | -234 |
| | | Upstream | -237 |
| | | Upstream | -240 |
Matrix_195 | GATA2;GATA4 | Not available | Intron | 682 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -916 |
| | | Upstream | -981 |
| | | Upstream | -982 |
| | | Upstream | -985 |
| | | Upstream | -986 |
Matrix_211 | MYB3 | Not available | Upstream | -972 |
Matrix_216 | TCP16 | Not available | Upstream | -983 |
Matrix_232 | TCP23 | Not available | Upstream | -984 |
| | | Upstream | -985 |
Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Upstream | -78 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -983 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -982 |
| | | Upstream | -983 |
| | | Upstream | -984 |
Matrix_281 | TCP13 | Not available | Upstream | -985 |
| | | Upstream | -986 |
Matrix_294 | MEE35 | Not available | Upstream | -985 |
| | | Upstream | -986 |
Matrix_297 | TCP15 | Not available | Upstream | -984 |
| | | Upstream | -985 |
Matrix_315 | MYB111 | Not available | Upstream | -162 |
| | | Upstream | -972 |
Matrix_348 | AT5G51910 | Not available | Upstream | -983 |
| | | Upstream | -984 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -163 |
| | | Upstream | -972 |
| | | Upstream | -973 |
Matrix_385 | DEAR4 | Not available | Upstream | -77 |
Matrix_394 | DREB_U | Not available | Upstream | -77 |
Matrix_40 | TCP2 | Not available | Upstream | -983 |
| | | Upstream | -984 |
Matrix_401 | MYB55 | Not available | Upstream | -162 |
| | | Upstream | -972 |
| | | Upstream | -975 |
| | | Upstream | -976 |
Matrix_42 | AT2G45680 | Not available | Upstream | -983 |
| | | Upstream | -984 |
Matrix_452 | MYB46 | Not available | Upstream | -158 |
| | | Upstream | -1372 |
Matrix_455 | MYB111 | Not available | Upstream | -162 |
| | | Upstream | -972 |
Matrix_478 | AT1G01250 | Not available | Upstream | -78 |
Matrix_496 | ATMYB15 | Not available | Upstream | -162 |
Matrix_507 | TCP3 | Not available | Upstream | -984 |
| | | Upstream | -985 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -162 |
| | | Upstream | -994 |
| | | Upstream | -995 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -78 |
Matrix_82 | TCP17 | Not available | Upstream | -985 |
| | | Upstream | -986 |
Matrix_92 | AT1G33760 | Not available | Upstream | -77 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -977 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -163 |
| | | Upstream | -380 |
| | | Upstream | -579 |
| | | Upstream | -972 |
| | | Upstream | -996 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -972 |
| | | Upstream | -996 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -164 |
| | | Upstream | -583 |
| | | Upstream | -957 |
| | | Upstream | -972 |
| | | Upstream | -997 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -138 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -972 |
| | | Upstream | -996 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -163 |
| | | Upstream | -972 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -78 |
Motif_489 | SORLREP3AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Intron | 4360 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -162 |
| | | Upstream | -868 |
| | | Upstream | -972 |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | Upstream | -78 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -986 |
Motif_61 | PALBOXLPC | Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation | Upstream | -972 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -78 |
| | | Upstream | -1394 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -162 |
| | | Upstream | -868 |
| | | Upstream | -972 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -142 |
Motif_8 | PALBOXPPC | Box P; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation | Upstream | -865 |