View conserved binding sites


Gene
PT16G09410
Description
Chloroplast envelope membrane protein
Alias
Potri.016G094100.1;Potri.016G094100.1;PAC:27013591;Potri.016G094100
Binding siteNameDescriptionLocationPosition
Matrix_106AT5G47390Not availableDownstream2321
Matrix_271AT3G16350Not availableDownstream2321
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroDownstream2344
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream2344
Downstream2348
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesDownstream2345
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionDownstream2321
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyDownstream2178
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream2182
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesDownstream2321
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisDownstream2182
Motif_419MYB4 binding site motifNot availableDownstream2344
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream2312
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisDownstream2347
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyDownstream2178
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseDownstream2321
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream2178
Motif_614MYBGAHVCentral element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repressionDownstream2178
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Downstream2322
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream2178