View conserved binding sites


Gene
PT06G20020
Description
protein ligase RHF2A
Alias
Potri.006G200200;Potri.006G200200.1;Potri.006G200200.1;PAC:27006681
Binding siteNameDescriptionLocationPosition
Matrix_25AP3Not availableUpstream-1705
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream4275
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesDownstream3611
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream3586
Downstream3592
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream4272
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream4273
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneDownstream3586