PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: PPE_006G22200
Description: Tubulin alpha
Alias: ppa005613m.g;ppa005613m;PAC:17668922;ppa005613m

Binding site	Name	Description	Location	Position
Matrix_141	AT3G25990	Not available	Upstream	-209
Matrix_161	MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570	Not available	Intron	322
Matrix_195	GATA2;GATA4	Not available	Intron	323
Matrix_196	TCP20;AT5G41030	Not available	Upstream	-592
Matrix_203	GATA9;GATA12	Not available	Intron	392
Matrix_226	GATA1	Not available	Intron	323
Matrix_232	TCP23	Not available	Upstream	-591
Matrix_286	GATA7	Not available	Intron	323
Matrix_39	AP1	Not available	Upstream	-87
Matrix_505	GATA8	Not available	Intron	323
Matrix_507	TCP3	Not available	Upstream	-591
Motif_1	GT1CORE	Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex	Upstream	-201
Motif_179	CACGTGMOTIF;BES1;PIF4;PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	Upstream	-419
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	Upstream	-1803
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	Upstream	-1804
			Upstream	-94
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	Upstream	-351
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	Upstream	-1805
Motif_65	BS1EGCCR	BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression	Upstream	-186
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	Upstream	-1799
			Upstream	-77
Motif_682	GT1GMSCAM4	GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression	Upstream	-1799
			Upstream	-77