PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: PPE_001G13770
Description: Histidine-containing phosphotransfer protein
Alias: ppa012790m.g;ppa012790m;PAC:17662237;ppa012790m

Binding site	Name	Description	Location	Position
Matrix_203	GATA9;GATA12	Not available	Upstream	-104
Matrix_372	ANAC81	DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus	Intron	425
			Intron	413
			Intron	397
			Intron	389
			Intron	202
			Intron	181
Matrix_407	AP1	Not available	Intron	119
			Intron	110
Matrix_412	GL1	Not available	Intron	511
			Intron	195
Matrix_74	LFY	Not available	Intron	120
			Intron	111
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	Upstream	-498
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	Upstream	-482
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	Intron	716
			Intron	399
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	Upstream	-1160
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	Upstream	-118
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	Upstream	-119
Motif_346	SND1;VND6;VND7;NST1;NST2	Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis	Upstream	-93
Motif_357	NTBBF1ARROLB	NtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin induction	Downstream	1491
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	Upstream	-127
Motif_410	ANAERO1CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator	Intron	614
			Intron	609
			Intron	508
			Intron	192
			Intron	175
			Intron	106
			Intron	101
Motif_441	GAGA8HVBKN3	GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR	Upstream	-1762
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	Upstream	-99
Motif_563	PYRIMIDINEBOXOSRAMY1A	Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site	Upstream	-166
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	Intron	802
Motif_628	TATCCAOSAMY	TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2	Upstream	-276
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	Upstream	-268
			Upstream	-370
			Upstream	-372
			Upstream	-374
			Upstream	-376
			Upstream	-378
			Upstream	-1763
			Upstream	-1765
			Upstream	-1767
			Upstream	-1769
Motif_98	SEF3MOTIFGM	SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4	Intron	96