View conserved binding sites


Gene
PPE_001G07720
Description
Lysine--tRNA ligase
Alias
ppa016996m.g;ppa016996m;PAC:17667839;ppa016996m
Binding siteNameDescriptionLocationPosition
Matrix_224ERF1Not availableUpstream-744
Matrix_360ORA59Not availableUpstream-743
Matrix_484ATERF13Not availableUpstream-743
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1461
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-687
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1670
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1670
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1670
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-687
Upstream-685
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-687
Upstream-685
Upstream-683
Upstream-681
Upstream-679
Upstream-677
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-766