| Matrix_152 | EIL1;AT5G65100 | Not available | Upstream | -400 |
| Matrix_181 | Dof5.7 | Not available | Upstream | -1871 |
| Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -372 |
| | | Upstream | -373 |
| | | Upstream | -378 |
| Matrix_232 | TCP23 | Not available | Upstream | -373 |
| | | Upstream | -374 |
| | | Upstream | -376 |
| | | Upstream | -377 |
| Matrix_297 | TCP15 | Not available | Upstream | -373 |
| | | Upstream | -374 |
| | | Upstream | -376 |
| | | Upstream | -377 |
| Matrix_348 | AT5G51910 | Not available | Upstream | -374 |
| | | Upstream | -375 |
| | | Upstream | -376 |
| Matrix_42 | AT2G45680 | Not available | Upstream | -374 |
| | | Upstream | -375 |
| | | Upstream | -376 |
| Matrix_48 | PI | Not available | Upstream | -362 |
| Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -397 |
| Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Downstream | 3566 |
| Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 3572 |
| Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 3572 |
| Motif_683 | AtMYB2 BS in RD22 | Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression | Downstream | 3566 |
| Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -372 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -359 |
| | | Upstream | -361 |
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