Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -21 |
| | | Upstream | -22 |
| | | Upstream | -26 |
| | | Upstream | -27 |
Matrix_117 | ANT | Not available | Upstream | -26 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -216 |
| | | Upstream | -217 |
Matrix_146 | ORA47 | Not available | Upstream | -24 |
Matrix_203 | GATA9;GATA12 | Not available | Upstream | -214 |
| | | Upstream | -215 |
Matrix_224 | ERF1 | Not available | Upstream | -28 |
Matrix_250 | ADAP;AT1G79700;WRI1;ANT | Not available | Upstream | -23 |
Matrix_272 | DEAR4 | Not available | Upstream | -24 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -21 |
Matrix_333 | GATA3 | Not available | Upstream | -214 |
| | | Upstream | -215 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -25 |
Matrix_409 | DEAR3 | Not available | Upstream | -25 |
Matrix_488 | ABF1 | Not available | Upstream | -10 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -209 |
| | | Upstream | -568 |
| | | Upstream | -573 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -315 |
| | | Upstream | -317 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -448 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -131 |
| | | Upstream | -133 |
| | | Upstream | -135 |
| | | Upstream | -137 |
| | | Upstream | -139 |
| | | Upstream | -141 |
| | | Upstream | -143 |
| | | Upstream | -145 |
| | | Upstream | -147 |
| | | Upstream | -315 |
| | | Upstream | -317 |
| | | Upstream | -319 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -229 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -550 |
| | | Upstream | -642 |
| | | Upstream | -804 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -38 |
| | | Upstream | -230 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -153 |
| | | Upstream | -155 |
| | | Upstream | -191 |
| | | Upstream | -193 |
| | | Upstream | -195 |
| | | Upstream | -316 |
| | | Upstream | -318 |
| | | Upstream | -320 |
| | | Upstream | -322 |
| | | Upstream | -324 |
| | | Upstream | -326 |