| Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -971 |
| | | Upstream | -973 |
| Matrix_146 | ORA47 | Not available | Upstream | -925 |
| Matrix_272 | DEAR4 | Not available | Upstream | -925 |
| Matrix_378 | ATERF1 | Not available | Upstream | -925 |
| Matrix_414 | AGL15 | Not available | Upstream | -984 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -927 |
| Matrix_497 | AP3 | Not available | Upstream | -1414 |
| Matrix_74 | LFY | Not available | Upstream | -1414 |
| Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -248 |
| | | Upstream | -356 |
| Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | Upstream | -795 |
| Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -247 |
| Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Upstream | -1055 |
| Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -246 |
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