View conserved binding sites


Gene
GM17G08980
Description
Transcription factor BIM1
Alias
Glyma17g08980;Glyma17g08980.1;PAC:26313036;Glyma17g08980.1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesIntron431
Matrix_113ABI5Not availableIntron431
Matrix_119RRTF1Not availableUpstream-1036
Upstream-1037
Matrix_138RRTF1Not availableUpstream-1036
Upstream-1037
Matrix_146ORA47Not availableUpstream-145
Matrix_147ERF3;AT1G80580Not availableUpstream-260
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorIntron434
Matrix_176MYB98Not availableUpstream-1045
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron1803
Matrix_196TCP20;AT5G41030Not availableIntron624
Intron623
Matrix_232TCP23Not availableIntron627
Intron624
Matrix_234RAP2.3Not availableUpstream-1037
Upstream-1038
Matrix_25AP3Not availableUpstream-883
Matrix_252RAP2.6Not availableUpstream-145
Matrix_277RAP2.6Not availableUpstream-1036
Upstream-1037
Matrix_297TCP15Not availableIntron627
Intron625
Intron624
Matrix_301PIL5Not availableIntron435
Matrix_323BIM3Not availableIntron430
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1036
Upstream-1037
Matrix_343AT2G33710Not availableUpstream-1037
Upstream-1038
Matrix_344ATERF15;AT4G18450Not availableUpstream-224
Matrix_348AT5G51910Not availableIntron625
Matrix_355ERF10;ERF11Not availableUpstream-1036
Upstream-1037
Matrix_363RAP2.3Not availableUpstream-1036
Upstream-1037
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableIntron430
Intron429
Matrix_369AT2G18300Not availableIntron1802
Intron432
Intron430
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-17
Matrix_378ATERF1Not availableUpstream-145
Matrix_406ATERF-7Not availableUpstream-1035
Upstream-1036
Matrix_42AT2G45680Not availableIntron626
Intron625
Matrix_426CRF1;CRF2Not availableUpstream-1038
Upstream-1039
Matrix_45DRNNot availableUpstream-260
Matrix_462ATERF-8Not availableUpstream-1035
Upstream-1036
Matrix_473RRTF1Not availableUpstream-1037
Upstream-1038
Matrix_488ABF1Not availableUpstream-862
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1037
Upstream-1038
Matrix_506DRNL;ATERF-4Not availableUpstream-1038
Upstream-1039
Matrix_53MYC3Not availableIntron429
Intron428
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1036
Upstream-1037
Matrix_84AtGRF6Not availableUpstream-1039
Matrix_91CRF3Not availableUpstream-1037
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexDownstream7692
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterDownstream7703
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsIntron430
Intron428
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-854
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesIntron429
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1047
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Intron429
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-953
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREIntron429
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1047
Motif_256RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsIntron428
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1047
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureIntron429
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-260
Upstream-869
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream7694
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterDownstream7589
Motif_419MYB4 binding site motifNot availableDownstream7589
Intron419
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-849
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-952
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream7580
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Downstream7561
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceIntron457
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream7615
Downstream7589
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-412
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream7693
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream7517
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterIntron441
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream7615
Downstream7589