View conserved binding sites


Gene
GM14G03890
Description
No description available
Alias
Glyma14g03890;Glyma14g03890.1;PAC:26284547;Glyma14g03890.1
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-211
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-210
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-211
Matrix_207WRKY10;WRKY57;AT2G44745;ATWRKY13;WRKY49Not availableUpstream-1459
Matrix_209RAP2.6Not availableUpstream-231
Matrix_244DREB2CNot availableUpstream-211
Matrix_263WRKY33;WRKY19;WRKY32Not availableUpstream-222
Matrix_3WRKY48Not availableUpstream-222
Matrix_315MYB111Not availableUpstream-211
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-211
Matrix_385DEAR4Not availableUpstream-211
Matrix_387ORA47Not availableUpstream-210
Matrix_394DREB_UNot availableUpstream-211
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-210
Matrix_401MYB55Not availableUpstream-211
Matrix_409DEAR3Not availableUpstream-211
Matrix_448ATERF6Not availableUpstream-232
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-211
Matrix_455MYB111Not availableUpstream-211
Matrix_478AT1G01250Not availableUpstream-210
Matrix_5AT5G51190;ERF104Not availableUpstream-231
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-211
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-210
Matrix_75WRKY29Not availableUpstream-222
Matrix_92AT1G33760Not availableUpstream-211
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-247
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-251
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-258
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-17
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-19
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-209
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-238
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-209
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-101
Downstream1644
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-209
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-220
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-209
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-242
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-28