View conserved binding sites


Gene
GM11G06050
Description
Cyclin-dependent kinase inhibitor
Alias
Glyma11g06050;Glyma11g06050.1;PAC:26297690;Glyma11g06050.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-400
Upstream-401
Matrix_110ATABI4;AT3G57600Not availableUpstream-401
Upstream-402
Upstream-403
Upstream-404
Matrix_113ABI5Not availableDownstream1882
Matrix_119RRTF1Not availableUpstream-399
Upstream-400
Matrix_134ABF1Not availableDownstream1882
Matrix_138RRTF1Not availableUpstream-399
Upstream-400
Matrix_146ORA47Not availableUpstream-400
Upstream-401
Matrix_147ERF3;AT1G80580Not availableUpstream-400
Upstream-403
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-401
Upstream-402
Matrix_16AT3G04450;PHL1Not availableUpstream-377
Matrix_165KNAT1Not availableUpstream-372
Upstream-373
Matrix_184AGL15Not availableUpstream-889
Matrix_190ATERF1Not availableUpstream-400
Upstream-401
Upstream-402
Upstream-418
Matrix_223MYB60;ATMYB31;ATMYB30;MYB94;MYBCOV1Not availableUpstream-613
Matrix_234RAP2.3Not availableUpstream-400
Upstream-401
Upstream-402
Matrix_252RAP2.6Not availableUpstream-400
Upstream-401
Upstream-402
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-371
Matrix_261ATERF-1Not availableUpstream-400
Upstream-401
Matrix_272DEAR4Not availableUpstream-400
Upstream-401
Matrix_287ERF2Not availableUpstream-400
Matrix_288RAP2.3Not availableUpstream-399
Upstream-400
Matrix_320MYC4Not availableDownstream1882
Matrix_324AT2G01060Not availableUpstream-377
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-399
Upstream-400
Matrix_334AT3G23230Not availableUpstream-401
Matrix_343AT2G33710Not availableUpstream-400
Upstream-401
Matrix_355ERF10;ERF11Not availableUpstream-399
Upstream-400
Matrix_361AT1G25550Not availableUpstream-377
Matrix_363RAP2.3Not availableUpstream-399
Upstream-400
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-400
Matrix_378ATERF1Not availableUpstream-400
Upstream-401
Matrix_380ATMYR1Not availableUpstream-376
Upstream-377
Matrix_406ATERF-7Not availableUpstream-398
Matrix_418KNAT6;KNAT2Not availableUpstream-371
Matrix_423AT3G04030Not availableUpstream-377
Matrix_437MYC2Not availableDownstream1882
Matrix_448ATERF6Not availableUpstream-399
Matrix_45DRNNot availableUpstream-400
Upstream-401
Upstream-403
Upstream-404
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-399
Matrix_462ATERF-8Not availableUpstream-398
Upstream-399
Matrix_473RRTF1Not availableUpstream-400
Upstream-401
Upstream-402
Matrix_476bHLH115;bHLH34Not availableDownstream1882
Matrix_491AT1G68670;AT3G25790Not availableUpstream-377
Matrix_493AT1G22985;AT1G71130Not availableUpstream-400
Upstream-401
Matrix_50ATERF14;AT5G43410Not availableUpstream-399
Matrix_506DRNL;ATERF-4Not availableUpstream-401
Matrix_508APL;AT3G12730;AT3G24120;UNE16Not availableUpstream-377
Matrix_517ERF12Not availableUpstream-403
Upstream-404
Matrix_53MYC3Not availableDownstream1881
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-402
Matrix_60AT1G01260;AT5G57150Not availableDownstream1882
Matrix_69AT2G03500Not availableUpstream-377
Upstream-378
Matrix_7PIF4Not availableDownstream1881
Matrix_74LFYNot availableUpstream-889
Matrix_80BIM1Not availableDownstream1882
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-401
Upstream-402
Matrix_91CRF3Not availableUpstream-400
Upstream-401
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsDownstream1880
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-1885
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream1881
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-274
Upstream-408
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-284
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1881
Upstream-1885
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREDownstream1882
Downstream1881
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-274
Upstream-277
Upstream-363
Upstream-408
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemDownstream1882
Upstream-1884
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-629
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-278
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-628
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-274
Upstream-408
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream1881
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1885
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-376
Motif_497ARE1ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genesUpstream-354
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Downstream1872
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-393
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionDownstream1220
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneDownstream1880
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-353
Motif_648ARE2ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1Upstream-354
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-393
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisDownstream1874
Downstream1873
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-160