Matrix_101 | ERF5 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -401 |
| | | Upstream | -402 |
| | | Upstream | -403 |
| | | Upstream | -404 |
Matrix_113 | ABI5 | Not available | Downstream | 1882 |
Matrix_119 | RRTF1 | Not available | Upstream | -399 |
| | | Upstream | -400 |
Matrix_134 | ABF1 | Not available | Downstream | 1882 |
Matrix_138 | RRTF1 | Not available | Upstream | -399 |
| | | Upstream | -400 |
Matrix_146 | ORA47 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -400 |
| | | Upstream | -403 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -401 |
| | | Upstream | -402 |
Matrix_16 | AT3G04450;PHL1 | Not available | Upstream | -377 |
Matrix_165 | KNAT1 | Not available | Upstream | -372 |
| | | Upstream | -373 |
Matrix_184 | AGL15 | Not available | Upstream | -889 |
Matrix_190 | ATERF1 | Not available | Upstream | -400 |
| | | Upstream | -401 |
| | | Upstream | -402 |
| | | Upstream | -418 |
Matrix_223 | MYB60;ATMYB31;ATMYB30;MYB94;MYBCOV1 | Not available | Upstream | -613 |
Matrix_234 | RAP2.3 | Not available | Upstream | -400 |
| | | Upstream | -401 |
| | | Upstream | -402 |
Matrix_252 | RAP2.6 | Not available | Upstream | -400 |
| | | Upstream | -401 |
| | | Upstream | -402 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -371 |
Matrix_261 | ATERF-1 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_272 | DEAR4 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_287 | ERF2 | Not available | Upstream | -400 |
Matrix_288 | RAP2.3 | Not available | Upstream | -399 |
| | | Upstream | -400 |
Matrix_320 | MYC4 | Not available | Downstream | 1882 |
Matrix_324 | AT2G01060 | Not available | Upstream | -377 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -399 |
| | | Upstream | -400 |
Matrix_334 | AT3G23230 | Not available | Upstream | -401 |
Matrix_343 | AT2G33710 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -399 |
| | | Upstream | -400 |
Matrix_361 | AT1G25550 | Not available | Upstream | -377 |
Matrix_363 | RAP2.3 | Not available | Upstream | -399 |
| | | Upstream | -400 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -400 |
Matrix_378 | ATERF1 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_380 | ATMYR1 | Not available | Upstream | -376 |
| | | Upstream | -377 |
Matrix_406 | ATERF-7 | Not available | Upstream | -398 |
Matrix_418 | KNAT6;KNAT2 | Not available | Upstream | -371 |
Matrix_423 | AT3G04030 | Not available | Upstream | -377 |
Matrix_437 | MYC2 | Not available | Downstream | 1882 |
Matrix_448 | ATERF6 | Not available | Upstream | -399 |
Matrix_45 | DRN | Not available | Upstream | -400 |
| | | Upstream | -401 |
| | | Upstream | -403 |
| | | Upstream | -404 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -399 |
Matrix_462 | ATERF-8 | Not available | Upstream | -398 |
| | | Upstream | -399 |
Matrix_473 | RRTF1 | Not available | Upstream | -400 |
| | | Upstream | -401 |
| | | Upstream | -402 |
Matrix_476 | bHLH115;bHLH34 | Not available | Downstream | 1882 |
Matrix_491 | AT1G68670;AT3G25790 | Not available | Upstream | -377 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -399 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -401 |
Matrix_508 | APL;AT3G12730;AT3G24120;UNE16 | Not available | Upstream | -377 |
Matrix_517 | ERF12 | Not available | Upstream | -403 |
| | | Upstream | -404 |
Matrix_53 | MYC3 | Not available | Downstream | 1881 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -402 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Downstream | 1882 |
Matrix_69 | AT2G03500 | Not available | Upstream | -377 |
| | | Upstream | -378 |
Matrix_7 | PIF4 | Not available | Downstream | 1881 |
Matrix_74 | LFY | Not available | Upstream | -889 |
Matrix_80 | BIM1 | Not available | Downstream | 1882 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -401 |
| | | Upstream | -402 |
Matrix_91 | CRF3 | Not available | Upstream | -400 |
| | | Upstream | -401 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Downstream | 1880 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -1885 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 1881 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -274 |
| | | Upstream | -408 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -284 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1881 |
| | | Upstream | -1885 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Downstream | 1882 |
| | | Downstream | 1881 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -274 |
| | | Upstream | -277 |
| | | Upstream | -363 |
| | | Upstream | -408 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Downstream | 1882 |
| | | Upstream | -1884 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -629 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -278 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -628 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -274 |
| | | Upstream | -408 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 1881 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1885 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -376 |
Motif_497 | ARE1 | ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genes | Upstream | -354 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Downstream | 1872 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -393 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Downstream | 1220 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Downstream | 1880 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -353 |
Motif_648 | ARE2 | ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1 | Upstream | -354 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -393 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Downstream | 1874 |
| | | Downstream | 1873 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -160 |