View conserved binding sites


Gene
GM10G37960
Description
Tubulin beta
Alias
Glyma10g37960;Glyma10g37960.1;PAC:26346817;Glyma10g37960.1
Binding siteNameDescriptionLocationPosition
Matrix_173ZAP1Not availableUpstream-199
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-341
Upstream-524
Matrix_269FHY3/FAR1Not availableUpstream-39
Matrix_301PIL5Not availableUpstream-336
Matrix_323BIM3Not availableUpstream-524
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-525
Matrix_369AT2G18300Not availableUpstream-341
Upstream-522
Matrix_449BIM2Not availableUpstream-524
Matrix_80BIM1Not availableUpstream-340
Upstream-342
Upstream-523
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-46
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-211
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-342
Upstream-525
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-165
Upstream-208
Motif_207MAMMALENHANCore sequence in enhancers from polyoma virus and from the IgM heavy chain geneUpstream-138
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-165
Upstream-208
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-468
Upstream-481
Upstream-483
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-165
Upstream-208
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-331
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-149
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-221
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-38
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-139
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-47
Upstream-51
Upstream-55
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-1387
Upstream-1805