| Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -1130 |
| Matrix_130 | TCP16 | Not available | Downstream | 2998 |
| Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -7 |
| Matrix_211 | MYB3 | Not available | Upstream | -1133 |
| Matrix_216 | TCP16 | Not available | Downstream | 2998 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -1141 |
| Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Downstream | 2998 |
| Matrix_3 | WRKY48 | Not available | Upstream | -66 |
| Matrix_315 | MYB111 | Not available | Upstream | -1133 |
| Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -67 |
| Matrix_325 | WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2 | Not available | Upstream | -67 |
| Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -1134 |
| Matrix_455 | MYB111 | Not available | Upstream | -1133 |
| Matrix_496 | ATMYB15 | Not available | Upstream | -1130 |
| Matrix_75 | WRKY29 | Not available | Upstream | -66 |
| Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -1133 |
| Motif_419 | MYB4 binding site motif | Not available | Upstream | -568 |
| Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -10 |
| | | Upstream | -794 |
| Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -954 |
| | | Upstream | -1427 |
| Motif_668 | TCA1MOTIF | TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter | Upstream | -1876 |
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