| Matrix_134 | ABF1 | Not available | Upstream | -267 |
| Matrix_138 | RRTF1 | Not available | Upstream | -12 |
| Matrix_146 | ORA47 | Not available | Upstream | -285 |
| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -267 |
| Matrix_224 | ERF1 | Not available | Upstream | -286 |
| Matrix_250 | ADAP;AT1G79700;WRI1;ANT | Not available | Upstream | -54 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -285 |
| Matrix_272 | DEAR4 | Not available | Upstream | -285 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -11 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -12 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -285 |
| Matrix_409 | DEAR3 | Not available | Upstream | -286 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -10 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -284 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 5638 |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -222 |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench