Matrix_180 | SPL1 | Not available | Upstream | -3 |
Matrix_187 | CDC5 | Not available | Upstream | -422 |
Matrix_191 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -616 |
Matrix_199 | AT1G69170;SPL9;SPL15;SPL13A;SPL13B | Not available | Upstream | -3 |
| | | Upstream | -4 |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | Upstream | -422 |
Matrix_25 | AP3 | Not available | Upstream | -341 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -432 |
Matrix_307 | RGL2;RGL3 | Not available | Upstream | -2 |
Matrix_31 | SPL1 | Not available | Upstream | -2 |
| | | Upstream | -4 |
Matrix_328 | AT1G76580 | Not available | Upstream | -3 |
Matrix_349 | CDC5 | Not available | Upstream | -422 |
Matrix_396 | AP3 | Not available | Upstream | -403 |
| | | Upstream | -404 |
Matrix_414 | AGL15 | Not available | Upstream | -333 |
| | | Upstream | -340 |
| | | Upstream | -435 |
Matrix_450 | SPL7 | Not available | Upstream | -2 |
| | | Upstream | -4 |
Matrix_48 | PI | Not available | Upstream | -432 |
| | | Upstream | -441 |
Matrix_85 | SPL5 | Not available | Upstream | -3 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -509 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -373 |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | Upstream | -490 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -487 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -493 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -487 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -290 |
| | | Upstream | -398 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -487 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -405 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -43 |
| | | Upstream | -149 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -517 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -517 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -331 |
| | | Upstream | -333 |
| | | Upstream | -335 |
| | | Upstream | -367 |
| | | Upstream | -458 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -374 |