Matrix_113 | ABI5 | Not available | Intron | 4015 |
Matrix_122 | ABF1;AREB2 | Not available | Intron | 996 |
Matrix_129 | ABF1 | Not available | Intron | 997 |
| | | Intron | 4016 |
Matrix_145 | GBF4;AT5G44080 | Not available | Intron | 998 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Intron | 993 |
Matrix_192 | FHY3/FAR1 | Not available | Intron | 4013 |
Matrix_194 | HYH;HY5 | Not available | Intron | 4013 |
Matrix_214 | AP1 | Not available | Intron | 995 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 1024 |
Matrix_264 | ATAREB1 | Not available | Intron | 4013 |
Matrix_338 | AP2 | Not available | Intron | 4013 |
Matrix_356 | PRR5 | Not available | Intron | 4013 |
Matrix_389 | ILR3 | Not available | Intron | 4464 |
Matrix_403 | BZR1 | Not available | Intron | 995 |
| | | Intron | 4014 |
Matrix_7 | PIF4 | Not available | Intron | 4464 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -460 |
| | | Upstream | -458 |
| | | Upstream | -456 |
| | | Upstream | -454 |
| | | Upstream | -452 |
| | | Upstream | -450 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -424 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -1635 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Downstream | 4498 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -1635 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -1646 |
| | | Upstream | -436 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 4622 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -1635 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -1646 |
| | | Upstream | -897 |
| | | Upstream | -436 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -460 |
| | | Upstream | -458 |
| | | Upstream | -456 |
| | | Upstream | -454 |
| | | Upstream | -452 |
| | | Upstream | -450 |
| | | Upstream | -448 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -166 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1639 |
| | | Upstream | -603 |
| | | Downstream | 4621 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -603 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -459 |
| | | Upstream | -457 |
| | | Upstream | -455 |
| | | Upstream | -453 |
| | | Upstream | -451 |
| | | Upstream | -449 |
| | | Upstream | -447 |
| | | Upstream | -445 |
| | | Upstream | -443 |
| | | Upstream | -441 |