View conserved binding sites


Gene
EG0011G30480
Description
Putative transcription factor bHLH056
Alias
Eucgr.K03592;Eucgr.K03592.1;PAC:23605352;Eucgr.K03592.1
Binding siteNameDescriptionLocationPosition
Matrix_113ABI5Not availableIntron4015
Matrix_122ABF1;AREB2Not availableIntron996
Matrix_129ABF1Not availableIntron997
Intron4016
Matrix_145GBF4;AT5G44080Not availableIntron998
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorIntron993
Matrix_192FHY3/FAR1Not availableIntron4013
Matrix_194HYH;HY5Not availableIntron4013
Matrix_214AP1Not availableIntron995
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron1024
Matrix_264ATAREB1Not availableIntron4013
Matrix_338AP2Not availableIntron4013
Matrix_356PRR5Not availableIntron4013
Matrix_389ILR3Not availableIntron4464
Matrix_403BZR1Not availableIntron995
Intron4014
Matrix_7PIF4Not availableIntron4464
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-460
Upstream-458
Upstream-456
Upstream-454
Upstream-452
Upstream-450
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-424
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1635
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationDownstream4498
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1635
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-1646
Upstream-436
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream4622
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1635
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-1646
Upstream-897
Upstream-436
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-460
Upstream-458
Upstream-456
Upstream-454
Upstream-452
Upstream-450
Upstream-448
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-166
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1639
Upstream-603
Downstream4621
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-603
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-459
Upstream-457
Upstream-455
Upstream-453
Upstream-451
Upstream-449
Upstream-447
Upstream-445
Upstream-443
Upstream-441