Matrix_48 | PI | Not available | Upstream | -560 |
| | | Upstream | -564 |
Matrix_89 | SOC1 | Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | Upstream | -1170 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -84 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -487 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -211 |
| | | Upstream | -213 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -221 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -497 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -242 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -489 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -494 |
Motif_323 | MYB1LEPR | Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG)) | Upstream | -244 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -436 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -244 |
| | | Upstream | -278 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -589 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -268 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -211 |
| | | Upstream | -213 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -221 |
| | | Upstream | -223 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -198 |
| | | Upstream | -200 |
| | | Upstream | -202 |
| | | Upstream | -204 |
| | | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -212 |
| | | Upstream | -214 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -220 |
| | | Upstream | -222 |
| | | Upstream | -224 |
| | | Upstream | -226 |
| | | Upstream | -228 |
| | | Upstream | -230 |
| | | Upstream | -568 |
| | | Upstream | -570 |
| | | Upstream | -572 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Downstream | 3582 |