Matrix_269 | FHY3/FAR1 | Not available | Upstream | -177 |
| | | Upstream | -1389 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -546 |
Matrix_297 | TCP15 | Not available | Upstream | -545 |
| | | Upstream | -548 |
Matrix_348 | AT5G51910 | Not available | Upstream | -546 |
| | | Upstream | -547 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -957 |
| | | Upstream | -1223 |
| | | Upstream | -1231 |
| | | Upstream | -1232 |
| | | Upstream | -1234 |
Matrix_42 | AT2G45680 | Not available | Upstream | -546 |
| | | Upstream | -547 |
Matrix_48 | PI | Not available | Upstream | -176 |
| | | Upstream | -185 |
| | | Upstream | -433 |
Motif_12 | CEREGLUBOX2PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | Upstream | -1195 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Downstream | 1951 |
| | | Downstream | 1949 |
| | | Upstream | -452 |
| | | Upstream | -454 |
| | | Upstream | -456 |
| | | Upstream | -458 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -51 |
| | | Upstream | -75 |
| | | Upstream | -1448 |
| | | Upstream | -1622 |
| | | Upstream | -1639 |
| | | Upstream | -1953 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -428 |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Upstream | -1185 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -772 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1952 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -1433 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1950 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -1433 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -1433 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -1450 |
Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | Upstream | -372 |
Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | Upstream | -1186 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1475 |
| | | Upstream | -1638 |
| | | Upstream | -1952 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -1435 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -1433 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -1433 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Downstream | 1951 |
| | | Downstream | 1949 |
| | | Downstream | 1947 |
| | | Upstream | -405 |
| | | Upstream | -452 |
| | | Upstream | -454 |
| | | Upstream | -456 |
| | | Upstream | -458 |
| | | Upstream | -460 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -1951 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -1176 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -1436 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -363 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -1433 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -363 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Downstream | 2173 |
| | | Downstream | 2171 |
| | | Downstream | 2169 |
| | | Downstream | 1952 |
| | | Downstream | 1950 |
| | | Downstream | 1948 |
| | | Downstream | 1946 |
| | | Downstream | 1944 |
| | | Downstream | 1942 |
| | | Downstream | 1940 |
| | | Upstream | -227 |
| | | Upstream | -241 |
| | | Upstream | -404 |
| | | Upstream | -406 |
| | | Upstream | -408 |
| | | Upstream | -410 |
| | | Upstream | -412 |
| | | Upstream | -451 |
| | | Upstream | -453 |
| | | Upstream | -455 |
| | | Upstream | -457 |
| | | Upstream | -459 |
| | | Upstream | -461 |
| | | Upstream | -463 |
| | | Upstream | -465 |
| | | Upstream | -467 |
| | | Upstream | -948 |
| | | Upstream | -1479 |
| | | Upstream | -1481 |