| Matrix_104 | PI | Not available | Upstream | -211 |
| Matrix_113 | ABI5 | Not available | Upstream | -211 |
| | | Upstream | -213 |
| Matrix_122 | ABF1;AREB2 | Not available | Upstream | -212 |
| Matrix_134 | ABF1 | Not available | Upstream | -212 |
| Matrix_192 | FHY3/FAR1 | Not available | Upstream | -209 |
| Matrix_194 | HYH;HY5 | Not available | Upstream | -209 |
| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -209 |
| Matrix_264 | ATAREB1 | Not available | Upstream | -209 |
| | | Upstream | -212 |
| Matrix_338 | AP2 | Not available | Upstream | -209 |
| Matrix_403 | BZR1 | Not available | Upstream | -210 |
| Matrix_443 | AGL15 | Not available | Upstream | -210 |
| Matrix_491 | AT1G68670;AT3G25790 | Not available | Upstream | -143 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -212 |
| | | Upstream | -213 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -395 |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -213 |
| | | Upstream | -395 |
| | | Upstream | -942 |
| Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -762 |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -392 |
| Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -380 |
| Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -392 |
| Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -392 |
| Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -392 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -211 |
| | | Upstream | -214 |
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