View conserved binding sites


Gene
CM00066G00250
Description
CLIP-associated protein
Alias
MELO3C024150;MELO3C024150T1
Binding siteNameDescriptionLocationPosition
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-49
Matrix_203GATA9;GATA12Not availableUpstream-49
Matrix_226GATA1Not availableUpstream-27
Matrix_246ARR10Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulatorsUpstream-48
Matrix_333GATA3Not availableUpstream-28
Matrix_408GATA12Not availableUpstream-48
Matrix_451STY1Not availableIntron10363
Matrix_453EIL3Not availableIntron6397
Intron12563
Matrix_505GATA8Not availableUpstream-48
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-507
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-506
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-506
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-42
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionIntron10348
Intron10349
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-358
Upstream-356