View conserved binding sites


Gene
CM00026G03480
Description
Translocator protein homolog
Alias
MELO3C016017;MELO3C016017T1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-61
Upstream-62
Matrix_109GBF3Not availableUpstream-61
Upstream-62
Matrix_113ABI5Not availableUpstream-61
Upstream-62
Upstream-1680
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-60
Matrix_122ABF1;AREB2Not availableUpstream-61
Upstream-62
Matrix_129ABF1Not availableUpstream-62
Upstream-63
Matrix_134ABF1Not availableUpstream-63
Upstream-64
Matrix_145GBF4;AT5G44080Not availableUpstream-63
Upstream-64
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-59
Matrix_156POC1Not availableUpstream-63
Upstream-64
Matrix_192FHY3/FAR1Not availableUpstream-60
Upstream-1678
Matrix_194HYH;HY5Not availableUpstream-60
Matrix_214AP1Not availableUpstream-60
Upstream-61
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-61
Upstream-62
Upstream-1680
Matrix_264ATAREB1Not availableUpstream-60
Upstream-62
Upstream-63
Matrix_296GBF2Not availableUpstream-62
Upstream-63
Matrix_300bZIP68;bZIP16Not availableUpstream-62
Upstream-63
Matrix_301PIL5Not availableUpstream-58
Matrix_331GBF1Not availableUpstream-61
Upstream-62
Matrix_338AP2Not availableUpstream-60
Matrix_345POC1Not availableUpstream-59
Upstream-60
Matrix_356PRR5Not availableUpstream-60
Upstream-1678
Matrix_359FLCNot availableUpstream-60
Upstream-61
Matrix_403BZR1Not availableUpstream-60
Upstream-61
Matrix_443AGL15Not availableUpstream-60
Upstream-61
Matrix_488ABF1Not availableUpstream-62
Matrix_55PIF3Not availableUpstream-61
Upstream-62
Matrix_77PRR5Not availableUpstream-60
Upstream-61
Matrix_80BIM1Not availableUpstream-61
Upstream-62
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-64
Upstream-1682
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-68
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-64
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-63
Upstream-64
Upstream-1681
Motif_244ABRE-like binding site motifNot availableUpstream-62
Upstream-64
Upstream-1680
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-63
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-64
Upstream-456
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-69
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-64
Motif_498SGBFGMGMAUX28bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoterUpstream-62
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-62
Upstream-1680
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-52
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-62