| Matrix_101 | ERF5 | Not available | Upstream | -82 |
| Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -80 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -83 |
| Matrix_224 | ERF1 | Not available | Upstream | -84 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -82 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -81 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -81 |
| Matrix_364 | FLC | Not available | Upstream | -560 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -82 |
| | | Upstream | -85 |
| Matrix_387 | ORA47 | Not available | Upstream | -80 |
| | | Upstream | -81 |
| | | Upstream | -186 |
| Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -81 |
| Matrix_396 | AP3 | Not available | Upstream | -35 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -80 |
| Matrix_409 | DEAR3 | Not available | Upstream | -81 |
| | | Upstream | -84 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -80 |
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -82 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -81 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -83 |
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -84 |
| Matrix_91 | CRF3 | Not available | Upstream | -82 |
| Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | Upstream | -94 |
| | | Upstream | -112 |
| | | Upstream | -118 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1017 |
| Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -270 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -35 |
| Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -82 |
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