View conserved binding sites


Gene
CM00019G00380
Description
GDP-L-galactose phosphorylase 2
Alias
MELO3C013136;MELO3C013136T2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-168
Upstream-169
Upstream-170
Upstream-171
Matrix_105SPL14Not availableUpstream-226
Upstream-227
Upstream-267
Upstream-268
Matrix_115AGL15Not availableUpstream-140
Upstream-148
Matrix_141AT3G25990Not availableUpstream-340
Matrix_147ERF3;AT1G80580Not availableUpstream-170
Upstream-171
Matrix_151ASIL1Not availableUpstream-169
Upstream-170
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-169
Upstream-170
Upstream-171
Upstream-172
Matrix_180SPL1Not availableUpstream-231
Upstream-232
Upstream-681
Matrix_188SPL4Not availableUpstream-683
Matrix_221SPL7Not availableUpstream-683
Matrix_224ERF1Not availableUpstream-166
Upstream-167
Matrix_243RAP2.12;RAP2.2Not availableUpstream-169
Upstream-170
Matrix_25AP3Not availableUpstream-144
Upstream-145
Matrix_261ATERF-1Not availableUpstream-169
Upstream-170
Matrix_269FHY3/FAR1Not availableUpstream-148
Upstream-149
Matrix_287ERF2Not availableUpstream-168
Upstream-169
Matrix_307RGL2;RGL3Not availableUpstream-683
Matrix_31SPL1Not availableUpstream-682
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-169
Upstream-170
Matrix_328AT1G76580Not availableUpstream-231
Upstream-232
Matrix_334AT3G23230Not availableUpstream-169
Upstream-170
Matrix_342SPL14Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon ResonanceUpstream-267
Upstream-268
Matrix_343AT2G33710Not availableUpstream-168
Upstream-169
Matrix_344ATERF15;AT4G18450Not availableUpstream-170
Upstream-171
Matrix_355ERF10;ERF11Not availableUpstream-169
Upstream-170
Matrix_374AT5G07580;AT5G61590Not availableUpstream-169
Upstream-170
Upstream-171
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-166
Upstream-167
Upstream-169
Upstream-170
Matrix_378ATERF1Not availableUpstream-168
Upstream-169
Matrix_406ATERF-7Not availableUpstream-168
Upstream-169
Upstream-170
Upstream-171
Matrix_409DEAR3Not availableUpstream-166
Upstream-167
Upstream-169
Upstream-170
Matrix_433ATERF1Not availableUpstream-169
Upstream-170
Matrix_438AtbZIP63Not availableUpstream-222
Upstream-223
Matrix_448ATERF6Not availableUpstream-169
Upstream-170
Matrix_45DRNNot availableUpstream-170
Upstream-171
Matrix_450SPL7Not availableUpstream-230
Upstream-231
Upstream-232
Upstream-233
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-166
Upstream-167
Upstream-169
Upstream-170
Matrix_462ATERF-8Not availableUpstream-168
Upstream-169
Upstream-170
Upstream-171
Matrix_48PINot availableUpstream-510
Matrix_484ATERF13Not availableUpstream-170
Upstream-171
Matrix_492ETTNot availableUpstream-248
Matrix_493AT1G22985;AT1G71130Not availableUpstream-169
Upstream-170
Upstream-171
Matrix_5AT5G51190;ERF104Not availableUpstream-170
Upstream-171
Matrix_50ATERF14;AT5G43410Not availableUpstream-169
Upstream-170
Matrix_506DRNL;ATERF-4Not availableUpstream-169
Upstream-170
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-223
Upstream-224
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-166
Upstream-167
Upstream-169
Upstream-170
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-169
Upstream-170
Matrix_91CRF3Not availableUpstream-169
Upstream-170
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-594
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-344
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-851
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-590
Motif_244ABRE-like binding site motifNot availableUpstream-309
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-264
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-224
Upstream-309
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-270
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-249
Upstream-1283
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-851
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-300
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-1283
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-658
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-233
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-135
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-225
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-179
Upstream-351
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-179
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-320
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1559
Upstream-1561
Upstream-1563
Upstream-1565
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-157
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-25
Upstream-373
Upstream-476