Matrix_101 | ERF5 | Not available | Upstream | -168 |
| | | Upstream | -169 |
| | | Upstream | -170 |
| | | Upstream | -171 |
Matrix_105 | SPL14 | Not available | Upstream | -226 |
| | | Upstream | -227 |
| | | Upstream | -267 |
| | | Upstream | -268 |
Matrix_115 | AGL15 | Not available | Upstream | -140 |
| | | Upstream | -148 |
Matrix_141 | AT3G25990 | Not available | Upstream | -340 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -170 |
| | | Upstream | -171 |
Matrix_151 | ASIL1 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -169 |
| | | Upstream | -170 |
| | | Upstream | -171 |
| | | Upstream | -172 |
Matrix_180 | SPL1 | Not available | Upstream | -231 |
| | | Upstream | -232 |
| | | Upstream | -681 |
Matrix_188 | SPL4 | Not available | Upstream | -683 |
Matrix_221 | SPL7 | Not available | Upstream | -683 |
Matrix_224 | ERF1 | Not available | Upstream | -166 |
| | | Upstream | -167 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_25 | AP3 | Not available | Upstream | -144 |
| | | Upstream | -145 |
Matrix_261 | ATERF-1 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -148 |
| | | Upstream | -149 |
Matrix_287 | ERF2 | Not available | Upstream | -168 |
| | | Upstream | -169 |
Matrix_307 | RGL2;RGL3 | Not available | Upstream | -683 |
Matrix_31 | SPL1 | Not available | Upstream | -682 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_328 | AT1G76580 | Not available | Upstream | -231 |
| | | Upstream | -232 |
Matrix_334 | AT3G23230 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_342 | SPL14 | Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance | Upstream | -267 |
| | | Upstream | -268 |
Matrix_343 | AT2G33710 | Not available | Upstream | -168 |
| | | Upstream | -169 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -170 |
| | | Upstream | -171 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -169 |
| | | Upstream | -170 |
| | | Upstream | -171 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -166 |
| | | Upstream | -167 |
| | | Upstream | -169 |
| | | Upstream | -170 |
Matrix_378 | ATERF1 | Not available | Upstream | -168 |
| | | Upstream | -169 |
Matrix_406 | ATERF-7 | Not available | Upstream | -168 |
| | | Upstream | -169 |
| | | Upstream | -170 |
| | | Upstream | -171 |
Matrix_409 | DEAR3 | Not available | Upstream | -166 |
| | | Upstream | -167 |
| | | Upstream | -169 |
| | | Upstream | -170 |
Matrix_433 | ATERF1 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -222 |
| | | Upstream | -223 |
Matrix_448 | ATERF6 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_45 | DRN | Not available | Upstream | -170 |
| | | Upstream | -171 |
Matrix_450 | SPL7 | Not available | Upstream | -230 |
| | | Upstream | -231 |
| | | Upstream | -232 |
| | | Upstream | -233 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -166 |
| | | Upstream | -167 |
| | | Upstream | -169 |
| | | Upstream | -170 |
Matrix_462 | ATERF-8 | Not available | Upstream | -168 |
| | | Upstream | -169 |
| | | Upstream | -170 |
| | | Upstream | -171 |
Matrix_48 | PI | Not available | Upstream | -510 |
Matrix_484 | ATERF13 | Not available | Upstream | -170 |
| | | Upstream | -171 |
Matrix_492 | ETT | Not available | Upstream | -248 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -169 |
| | | Upstream | -170 |
| | | Upstream | -171 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -170 |
| | | Upstream | -171 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -223 |
| | | Upstream | -224 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -166 |
| | | Upstream | -167 |
| | | Upstream | -169 |
| | | Upstream | -170 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_91 | CRF3 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -594 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Upstream | -344 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -851 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -590 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -309 |
Motif_329 | AMMORESIIUDCRNIA1 | Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation | Upstream | -264 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -224 |
| | | Upstream | -309 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -270 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -249 |
| | | Upstream | -1283 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -851 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -300 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -1283 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -658 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -233 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -135 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -225 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -179 |
| | | Upstream | -351 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -179 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -320 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1559 |
| | | Upstream | -1561 |
| | | Upstream | -1563 |
| | | Upstream | -1565 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -157 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -25 |
| | | Upstream | -373 |
| | | Upstream | -476 |