View conserved binding sites


Gene
BR09G43730
Description
Cyclin-dependent kinase inhibitor 1
Alias
Bra039199;Bra039199
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-219
Matrix_165KNAT1Not availableUpstream-190
Matrix_176MYB98Not availableUpstream-183
Matrix_290AP2Not availableUpstream-177
Matrix_39AP1Not availableUpstream-103
Matrix_418KNAT6;KNAT2Not availableUpstream-191
Matrix_507TCP3Not availableUpstream-177
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-222
Upstream-180
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-222
Upstream-180
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-225
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-222
Upstream-180
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-44
Upstream-42
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterIntron176
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-44
Upstream-42
Upstream-40
Upstream-38
Upstream-36