View conserved binding sites


Gene
BR05G04780
Description
Cyclin-U2-1
Alias
Bra004888;Bra004888
Binding siteNameDescriptionLocationPosition
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-1534
Matrix_244DREB2CNot availableUpstream-1535
Matrix_312ARF11;MP;ARF6;IAA21;ARF8;ARF4Not availableUpstream-1536
Matrix_320MYC4Not availableUpstream-1676
Matrix_321HRDNot availableUpstream-1534
Matrix_385DEAR4Not availableUpstream-1535
Matrix_394DREB_UNot availableUpstream-1535
Matrix_439AP3Not availableUpstream-927
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-1535
Matrix_476bHLH115;bHLH34Not availableUpstream-1676
Matrix_478AT1G01250Not availableUpstream-1534
Matrix_480BES1Not availableUpstream-1678
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-1536
Matrix_60AT1G01260;AT5G57150Not availableUpstream-1676
Matrix_61ATCBF3Not availableUpstream-1535
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-1534
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1675
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-1534
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-1533
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-1096
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-1533
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-192
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-1095