PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Binding site	Name	Description	Location	Position
Motif_129	GAGAGMGSA1	GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA	Intron	122
			Intron	120
			Intron	118
			Intron	116
			Intron	114
			Intron	112
			Intron	110
			Intron	108
			Intron	106
			Intron	104
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	Upstream	-901
Motif_441	GAGA8HVBKN3	GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR	Intron	122
			Intron	120
			Intron	118
			Intron	116
			Intron	114
			Intron	112
			Intron	110
			Intron	108
			Intron	106
			Intron	104
			Intron	102
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	Upstream	-1262
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	Intron	123
			Intron	121
			Intron	119
			Intron	117
			Intron	115
			Intron	113
			Intron	111
			Intron	109
			Intron	107
			Intron	105
			Intron	103
			Intron	101
			Intron	99
			Intron	97
			Intron	95