| Matrix_161 | MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570 | Not available | Upstream | -40 |
| Matrix_396 | AP3 | Not available | Upstream | -35 |
| | | Upstream | -1107 |
| Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -1126 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -35 |
| Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -126 |
| Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -76 |
| | | Upstream | -346 |
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