View conserved binding sites


Gene
AT3G11100
Description
sequence-specific DNA binding transcription factors
Alias
Not available
Binding siteNameDescriptionLocationPosition
Matrix_128TGA2Not availableUpstream-135
Upstream-136
Upstream-137
Upstream-138
Matrix_139OBF5Not availableUpstream-136
Upstream-137
Upstream-138
Upstream-139
Matrix_166TGA4Not availableUpstream-135
Upstream-136
Upstream-137
Upstream-138
Matrix_228TGA2Not availableUpstream-136
Upstream-137
Matrix_282bZIP60Not availableUpstream-136
Upstream-137
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-133
Upstream-134
Upstream-137
Upstream-138
Matrix_311TGA1Not availableUpstream-135
Upstream-136
Upstream-137
Upstream-138
Matrix_399TGA1Not availableUpstream-134
Upstream-135
Upstream-137
Upstream-138
Matrix_419TGA9;PAN;TGA6;bZIP65Not availableUpstream-135
Upstream-136
Upstream-137
Upstream-138
Matrix_432AT1G77920Not availableUpstream-135
Upstream-136
Upstream-137
Upstream-138
Matrix_457TGA2Not availableUpstream-134
Upstream-135
Upstream-138
Upstream-139
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-27
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-146
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-26
Upstream-437
Upstream-697
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-146
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-168
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-31
Motif_33ACGTCBOXC-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding siteUpstream-138
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-146
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-137
Upstream-139
Upstream-1357
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-28
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-26
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-27
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1760
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-137
Upstream-139
Upstream-1357
Motif_583AtbZIP1The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA bindingUpstream-137
Motif_685PALINDROMICCBOXGMPalindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequenceUpstream-137