View conserved binding sites


Gene
AT1G54780
Description
thylakoid lumen 18.3 kDa protein
Alias
Q9ZVL6;thylakoid lumen protein 18.3
Binding siteNameDescriptionLocationPosition
Matrix_74LFYNot availableUpstream-493
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-80
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-1076
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-98
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-1381
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-70
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-116
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-1381
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-69
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-122
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-69