| Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1622 |
| Matrix_186 | FHY3 | Not available | Upstream | -1622 |
| Matrix_269 | FHY3/FAR1 | Not available | Upstream | -182 |
| | | Upstream | -179 |
| Matrix_314 | WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52 | Not available | Upstream | -1573 |
| Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -1573 |
| Matrix_58 | WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30 | Not available | Upstream | -1572 |
| Matrix_74 | LFY | Not available | Upstream | -1340 |
| Matrix_77 | PRR5 | Not available | Upstream | -1623 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -190 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -190 |
| Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -182 |
| | | Upstream | -179 |
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