PLAZA 3.0 Dicots : Binding Sites

Gene families associated with a binding site

All is shown and individual cells refer to the target genes (per species).

Binding site: Motif_494
Name: TOPOISOM
Description: Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)

#Associated genes: 34
#Associated gene families: 23

Click table-header(s) to enable sorting

gene family	#genes (in total)	#associated genes	species	aly	ath	atr	bra	bvu	cla	cme	cpa	cre	cru	csi	egr	fve	gma	gra	lja	mdo	mes	mtr	olu	osa	ppa	ppe	ptr	rco	sly	stu	tca	tpa	vvi	zma
HOM03D000015	2743	1	29	87	92	43	172	45	67	74	68	0	95	95	149	84	163	140	57	184	110	87	0	105	32	86	139	78	69	79	88	79	67	109
HOM03D000043	1616	1	31	51	50	26	93	39	38	42	29	63	49	32	45	36	122	76	23	108	52	71	16	61	37	32	65	33	51	66	34	50	41	85
HOM03D000057	1388	1	31	53	50	34	77	33	35	33	33	8	47	35	46	34	90	61	28	88	49	41	1	45	29	58	63	32	50	53	35	50	40	57
HOM03D000071	1215	3	31	38	35	26	71	26	29	25	28	16	35	35	34	40	65	67	13	101	51	31	11	33	33	33	53	30	47	49	33	35	34	58
HOM03D000110	883	2	29	29	27	16	54	16	25	25	20	0	29	22	28	18	63	59	11	56	39	32	0	31	26	20	39	21	34	36	18	28	19	42
HOM03D000114	828	1	29	29	28	14	45	20	26	26	20	0	28	20	26	17	67	44	15	47	35	33	0	29	18	19	39	23	27	29	21	29	25	29
HOM03D000118	811	1	31	37	24	16	56	17	23	25	19	2	30	21	37	16	54	42	12	55	35	34	1	27	8	22	31	19	28	30	18	22	21	29
HOM03D000164	622	1	31	17	18	14	33	13	15	14	12	8	18	14	16	14	42	32	14	49	19	18	7	17	16	12	21	12	31	47	14	16	14	35
HOM03D000165	617	1	31	15	17	13	29	16	16	17	15	26	16	15	16	17	46	30	10	40	22	24	1	19	17	17	31	16	16	15	18	15	20	32
HOM03D000275	413	1	31	13	11	7	18	8	9	9	8	3	10	17	15	9	22	17	9	20	29	15	1	15	10	16	27	13	16	19	9	12	12	14
HOM03D000345	346	3	29	8	8	4	15	10	17	13	6	0	8	10	42	7	19	15	4	17	11	13	0	22	6	7	13	8	12	14	6	7	10	14
HOM03D000360	341	2	29	11	12	7	23	6	9	8	6	0	11	9	14	10	19	19	7	20	13	12	0	18	5	10	15	8	12	11	8	10	9	19
HOM03D000422	296	1	29	9	9	6	13	8	8	6	9	0	9	8	12	11	24	14	2	14	10	11	0	19	7	8	9	9	8	15	11	7	5	15
HOM03D000528	248	2	29	4	8	5	17	5	8	8	9	0	9	6	5	5	26	9	3	14	9	12	0	7	4	6	12	7	8	7	6	9	7	13
HOM03D000572	233	1	30	13	9	5	13	5	5	5	7	0	8	7	8	3	15	13	5	9	12	6	1	8	4	6	12	8	7	7	6	8	9	9
HOM03D000695	200	1	29	8	8	2	10	3	4	5	6	0	8	5	5	6	12	9	2	17	9	6	0	7	1	5	11	4	10	9	6	7	5	10
HOM03D001036	144	2	30	5	6	3	9	2	3	2	5	2	5	5	4	3	8	6	0	7	9	2	1	4	6	5	8	4	4	3	4	6	6	7
HOM03D001296	119	3	28	2	1	2	2	3	4	6	2	0	3	3	16	5	12	4	5	6	4	5	0	3	0	5	3	3	5	2	3	2	4	4
HOM03D002812	65	1	29	0	1	3	2	2	3	3	8	2	2	1	2	2	2	1	0	4	2	2	1	2	2	1	1	1	2	4	1	3	2	3
HOM03D003092	58	1	30	2	2	1	2	1	1	1	2	0	2	1	1	1	2	4	1	2	3	1	1	2	11	1	1	2	2	2	2	2	1	1
HOM03D003334	54	2	25	2	2	1	5	1	2	1	1	0	2	2	0	1	7	3	1	3	3	2	0	0	0	2	3	2	1	1	2	3	1	0
HOM03D006199	35	1	28	1	1	1	3	1	1	1	1	1	1	2	1	0	2	2	1	1	1	1	0	1	1	1	1	1	1	0	1	1	3	1
HOM03D007056	31	1	28	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	0	0	1	1	1	1	0	1	1	1	2	2	1	1	1	1