PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_90
Name: GT1MOTIFPSRBCS
Description: GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE

#Associated genes: 623
#Associated MapMan terms: 204

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	115 (18.46%)	5	5	8	32	28	20	5	12
27.3	RNA.regulation of transcription	93 (14.93%)	3	5	6	28	21	17	4	9
29	protein	55 (8.83%)	7	4	4	18	7	5	3	7
30	signalling	44 (7.06%)	2	2	13	7	11	1	5	3
29.4	protein.postranslational modification	31 (4.98%)	5	4	2	8	2	3	3	4
17	hormone metabolism	30 (4.82%)	4	1	1	5	8	2	5	4
26	misc	22 (3.53%)	2	3	3	1	6	3	2	2
34	transport	20 (3.21%)	4	0	1	4	4	3	1	3
30.2	signalling.receptor kinases	19 (3.05%)	0	1	11	1	2	0	3	1
27.4	RNA.RNA binding	18 (2.89%)	2	0	2	2	5	3	1	3
28	DNA	18 (2.89%)	1	1	0	5	3	5	0	3
33	development	18 (2.89%)	2	0	0	4	4	3	1	4
20	stress	17 (2.73%)	1	0	4	5	3	2	1	1
10	cell wall	16 (2.57%)	0	0	3	4	2	1	3	3
33.99	development.unspecified	16 (2.57%)	2	0	0	4	4	3	0	3
1	PS	14 (2.25%)	0	2	4	4	1	1	0	2
17.5	hormone metabolism.ethylene	13 (2.09%)	2	1	0	2	3	0	2	3
20.2	stress.abiotic	13 (2.09%)	1	0	2	5	2	1	1	1
28.1	DNA.synthesis/chromatin structure	12 (1.93%)	1	1	0	3	3	2	0	2
30.2.17	signalling.receptor kinases.DUF 26	12 (1.93%)	0	0	10	0	0	0	2	0
1.3	PS.calvin cycle	11 (1.77%)	0	1	2	4	1	1	0	2
17.2	hormone metabolism.auxin	11 (1.77%)	2	0	1	2	3	1	1	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	11 (1.77%)	1	1	1	5	0	2	0	1
29.5	protein.degradation	11 (1.77%)	1	0	1	7	0	1	0	1
31	cell	11 (1.77%)	0	0	0	2	4	2	0	3
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	10 (1.61%)	2	0	1	2	2	1	1	1
20.2.1	stress.abiotic.heat	10 (1.61%)	1	0	2	3	2	1	1	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	10 (1.61%)	0	1	0	5	2	1	0	1
27.3.99	RNA.regulation of transcription.unclassified	10 (1.61%)	1	0	1	1	3	2	0	2
30.3	signalling.calcium	10 (1.61%)	1	1	1	2	4	0	1	0
17.5.2	hormone metabolism.ethylene.signal transduction	9 (1.44%)	1	1	0	1	1	0	2	3
29.2	protein.synthesis	9 (1.44%)	1	0	0	3	3	1	0	1
29.2.3	protein.synthesis.initiation	8 (1.28%)	1	0	0	2	3	1	0	1
29.4.1	protein.postranslational modification.kinase	8 (1.28%)	0	1	1	3	2	0	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	8 (1.28%)	0	1	1	3	2	0	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	7 (1.12%)	0	1	0	2	1	2	1	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	7 (1.12%)	0	0	1	1	2	2	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	7 (1.12%)	1	0	0	3	3	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (1.12%)	0	1	1	1	2	0	1	1
30.5	signalling.G-proteins	7 (1.12%)	1	0	1	1	2	1	0	1
1.3.6	PS.calvin cycle.aldolase	6 (0.96%)	0	1	1	2	1	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	6 (0.96%)	0	1	0	4	0	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	6 (0.96%)	0	0	1	1	3	0	0	1
29.5.11	protein.degradation.ubiquitin	6 (0.96%)	1	0	0	4	0	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	6 (0.96%)	1	0	0	1	3	1	0	0
31.1	cell.organisation	6 (0.96%)	0	0	0	1	4	0	0	1
13	amino acid metabolism	5 (0.80%)	1	0	1	0	1	0	0	2
26.3	misc.gluco-, galacto- and mannosidases	5 (0.80%)	1	1	1	0	1	1	0	0
28.99	DNA.unspecified	5 (0.80%)	0	0	0	1	0	3	0	1
30.11	signalling.light	5 (0.80%)	0	0	0	1	3	0	1	0
34.12	transport.metal	5 (0.80%)	2	0	0	2	0	0	0	1
10.5	cell wall.cell wall proteins	4 (0.64%)	0	0	1	0	1	0	1	1
10.6	cell wall.degradation	4 (0.64%)	0	0	1	1	0	1	1	0
11	lipid metabolism	4 (0.64%)	0	0	1	2	0	0	0	1
16	secondary metabolism	4 (0.64%)	0	1	1	0	1	1	0	0
20.1	stress.biotic	4 (0.64%)	0	0	2	0	1	1	0	0
24	Biodegradation of Xenobiotics	4 (0.64%)	1	0	0	2	0	0	0	1
24.2	Biodegradation of Xenobiotics.lactoylglutathione lyase	4 (0.64%)	1	0	0	2	0	0	0	1
26.10	misc.cytochrome P450	4 (0.64%)	0	0	2	0	1	0	0	1
26.2	misc.UDP glucosyl and glucoronyl transferases	4 (0.64%)	0	0	0	0	2	0	2	0
27.1	RNA.processing	4 (0.64%)	0	0	0	2	2	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	4 (0.64%)	0	0	1	0	2	1	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	4 (0.64%)	0	0	1	0	1	1	0	1
28.1.3	DNA.synthesis/chromatin structure.histone	4 (0.64%)	1	1	0	1	1	0	0	0
3	minor CHO metabolism	3 (0.48%)	0	0	1	0	1	1	0	0
10.1	cell wall.precursor synthesis	3 (0.48%)	0	0	1	0	1	0	0	1
10.2	cell wall.cellulose synthesis	3 (0.48%)	0	0	0	2	0	0	1	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	3 (0.48%)	0	0	0	2	0	0	1	0
10.5.4	cell wall.cell wall proteins.HRGP	3 (0.48%)	0	0	1	0	1	0	1	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	3 (0.48%)	0	0	1	1	0	0	1	0
13.2	amino acid metabolism.degradation	3 (0.48%)	1	0	1	0	0	0	0	1
13.2.3	amino acid metabolism.degradation.aspartate family	3 (0.48%)	1	0	1	0	0	0	0	1
13.2.3.4	amino acid metabolism.degradation.aspartate family.methionine	3 (0.48%)	1	0	1	0	0	0	0	1
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	3 (0.48%)	1	0	0	0	2	0	0	0
20.2.2	stress.abiotic.cold	3 (0.48%)	0	0	0	2	0	0	0	1
3.5	minor CHO metabolism.others	3 (0.48%)	0	0	1	0	1	1	0	0
21	redox	3 (0.48%)	1	0	0	0	1	1	0	0
23	nucleotide metabolism	3 (0.48%)	1	0	0	1	0	0	1	0
23.2	nucleotide metabolism.degradation	3 (0.48%)	1	0	0	1	0	0	1	0
26.7	misc.oxidases - copper, flavone etc	3 (0.48%)	1	0	0	0	1	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	3 (0.48%)	0	0	0	0	2	0	1	0
28.1.3.1	DNA.synthesis/chromatin structure.histone.H1	3 (0.48%)	1	1	0	0	1	0	0	0
29.3	protein.targeting	3 (0.48%)	0	0	1	0	2	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	3 (0.48%)	1	0	0	2	0	0	0	0
31.3	cell.cycle	3 (0.48%)	0	0	0	1	0	0	0	2
34.16	transport.ABC transporters and multidrug resistance systems	3 (0.48%)	1	0	0	0	1	0	0	1
34.3	transport.amino acids	3 (0.48%)	0	0	0	1	1	0	0	1
34.9	transport.metabolite transporters at the mitochondrial membrane	3 (0.48%)	0	0	0	1	1	0	1	0
1.1	PS.lightreaction	2 (0.32%)	0	1	1	0	0	0	0	0
1.3.13	PS.calvin cycle.rubisco interacting	2 (0.32%)	0	0	1	0	0	0	0	1
1.3.2	PS.calvin cycle.rubisco small subunit	2 (0.32%)	0	0	0	2	0	0	0	0
10.7	cell wall.modification	2 (0.32%)	0	0	0	1	0	0	0	1
11.9	lipid metabolism.lipid degradation	2 (0.32%)	0	0	1	1	0	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.32%)	0	0	1	1	0	0	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	2 (0.32%)	0	0	1	1	0	0	0	0
13.1	amino acid metabolism.synthesis	2 (0.32%)	0	0	0	0	1	0	0	1
15	metal handling	2 (0.32%)	1	0	0	1	0	0	0	0
15.2	metal handling.binding, chelation and storage	2 (0.32%)	1	0	0	1	0	0	0	0
17.4	hormone metabolism.cytokinin	2 (0.32%)	0	0	0	1	0	0	1	0
17.8	hormone metabolism.salicylic acid	2 (0.32%)	0	0	0	0	2	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	2 (0.32%)	0	0	0	0	2	0	0	0
21.1	redox.thioredoxin	2 (0.32%)	1	0	0	0	1	0	0	0
21.1.1	redox.thioredoxin.PDIL	2 (0.32%)	1	0	0	0	1	0	0	0
26.3.3	misc.gluco-, galacto- and mannosidases.alpha-mannosidase	2 (0.32%)	0	1	1	0	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	2 (0.32%)	0	0	0	1	0	1	0	0
27.1.1	RNA.processing.splicing	2 (0.32%)	0	0	0	0	2	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	2 (0.32%)	0	0	0	0	1	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.32%)	0	0	0	0	2	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.32%)	0	0	0	0	0	2	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.32%)	0	0	0	2	0	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	2 (0.32%)	0	0	0	0	0	1	0	1
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	2 (0.32%)	0	0	1	0	0	0	1	0
29.3.4	protein.targeting.secretory pathway	2 (0.32%)	0	0	1	0	1	0	0	0
29.5.1	protein.degradation.subtilases	2 (0.32%)	0	0	0	2	0	0	0	0
30.6	signalling.MAP kinases	2 (0.32%)	0	0	0	2	0	0	0	0
31.2	cell.division	2 (0.32%)	0	0	0	0	0	2	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	2 (0.32%)	0	0	0	1	0	0	0	1
34.19	transport.Major Intrinsic Proteins	2 (0.32%)	0	0	0	0	1	1	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.16%)	0	1	0	0	0	0	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.16%)	0	1	0	0	0	0	0	0
1.1.3	PS.lightreaction.cytochrome b6/f	1 (0.16%)	0	0	1	0	0	0	0	0
1.1.3.4	PS.lightreaction.cytochrome b6/f.apocytochrome f (CYF)	1 (0.16%)	0	0	1	0	0	0	0	0
1.2	PS.photorespiration	1 (0.16%)	0	0	1	0	0	0	0	0
1.2.2	PS.photorespiration.glycolate oxydase	1 (0.16%)	0	0	1	0	0	0	0	0
1.3.12	PS.calvin cycle.PRK	1 (0.16%)	0	0	0	0	0	1	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.16%)	0	0	0	0	0	1	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.16%)	0	0	0	0	0	0	0	1
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.16%)	0	0	0	0	0	0	0	1
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.16%)	0	0	0	0	0	1	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.16%)	0	0	0	1	0	0	0	0
11.1.9	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	1 (0.16%)	0	0	0	1	0	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.16%)	0	0	0	0	0	0	0	1
11.8.4	lipid metabolism.exotics (steroids, squalene etc).3-beta hydroxysteroid dehydrogenase/isomerase	1 (0.16%)	0	0	0	0	0	0	0	1
13.1.3	amino acid metabolism.synthesis.aspartate family	1 (0.16%)	0	0	0	0	0	0	0	1
13.1.3.5	amino acid metabolism.synthesis.aspartate family.lysine	1 (0.16%)	0	0	0	0	0	0	0	1
13.1.3.5.2	amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase	1 (0.16%)	0	0	0	0	0	0	0	1
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.16%)	0	0	0	0	1	0	0	0
13.1.6.3	amino acid metabolism.synthesis.aromatic aa.phenylalanine	1 (0.16%)	0	0	0	0	1	0	0	0
13.1.6.3.1	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	1 (0.16%)	0	0	0	0	1	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.16%)	0	0	1	0	0	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	1 (0.16%)	0	0	1	0	0	0	0	0
16.1.4.21	secondary metabolism.isoprenoids.carotenoids.violaxanthin de-epoxidase	1 (0.16%)	0	0	1	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.16%)	0	0	0	0	1	0	0	0
16.7	secondary metabolism.wax	1 (0.16%)	0	0	0	0	0	1	0	0
16.8	secondary metabolism.flavonoids	1 (0.16%)	0	1	0	0	0	0	0	0
16.8.1	secondary metabolism.flavonoids.anthocyanins	1 (0.16%)	0	1	0	0	0	0	0	0
16.8.1.21	secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase	1 (0.16%)	0	1	0	0	0	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.16%)	0	0	0	0	1	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.16%)	0	0	0	0	0	0	1	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.16%)	0	0	0	0	0	0	1	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.16%)	0	0	0	0	0	0	1	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.16%)	0	0	0	0	0	0	1	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.16%)	0	0	0	1	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.16%)	0	0	0	1	0	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.16%)	0	0	0	0	0	1	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.16%)	0	0	0	0	0	1	0	0
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	1 (0.16%)	0	0	0	0	0	1	0	0
18	Co-factor and vitamine metabolism	1 (0.16%)	0	0	0	1	0	0	0	0
18.2	Co-factor and vitamine metabolism.thiamine	1 (0.16%)	0	0	0	1	0	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.16%)	0	0	0	0	0	1	0	0
21.4	redox.glutaredoxins	1 (0.16%)	0	0	0	0	0	1	0	0
26.12	misc.peroxidases	1 (0.16%)	0	0	0	0	0	0	0	1
26.18	misc.invertase/pectin methylesterase inhibitor family protein	1 (0.16%)	0	1	0	0	0	0	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	1 (0.16%)	0	0	0	0	1	0	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	1 (0.16%)	0	0	0	0	1	0	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.16%)	0	0	0	0	0	1	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.16%)	0	0	0	1	0	0	0	0
26.6	misc.O-methyl transferases	1 (0.16%)	0	1	0	0	0	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.16%)	0	0	0	1	0	0	0	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.16%)	0	0	0	1	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.16%)	0	0	0	1	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.16%)	0	0	0	0	0	0	1	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.16%)	0	0	0	1	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.16%)	0	0	0	0	0	1	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.16%)	0	0	0	1	0	0	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.16%)	0	0	0	0	1	0	0	0
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	1 (0.16%)	0	0	0	0	0	0	0	1
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.16%)	0	0	0	0	0	1	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.16%)	0	0	0	0	0	0	0	1
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.16%)	0	0	1	0	0	0	0	0
27.3.80	RNA.regulation of transcription.zf-HD	1 (0.16%)	0	1	0	0	0	0	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.16%)	0	0	0	0	0	0	1	0
28.2	DNA.repair	1 (0.16%)	0	0	0	1	0	0	0	0
29.2.4	protein.synthesis.elongation	1 (0.16%)	0	0	0	1	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.16%)	0	0	0	0	1	0	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	1 (0.16%)	0	0	1	0	0	0	0	0
29.3.4.4	protein.targeting.secretory pathway.plasma membrane	1 (0.16%)	0	0	0	0	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.16%)	0	0	0	0	1	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.16%)	0	0	1	0	0	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.16%)	0	0	0	1	0	0	0	0
29.5.5	protein.degradation.serine protease	1 (0.16%)	0	0	0	0	0	0	0	1
29.7	protein.glycosylation	1 (0.16%)	0	0	0	0	0	0	0	1
30.1	signalling.in sugar and nutrient physiology	1 (0.16%)	0	0	0	0	0	0	0	1
33.2	development.late embryogenesis abundant	1 (0.16%)	0	0	0	0	0	0	1	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.16%)	0	0	0	0	0	0	0	1
34.13	transport.peptides and oligopeptides	1 (0.16%)	0	0	0	0	0	1	0	0
34.14	transport.unspecified cations	1 (0.16%)	0	0	0	0	0	1	0	0
34.17	transport.peroxisomes	1 (0.16%)	1	0	0	0	0	0	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	1 (0.16%)	0	0	0	0	1	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.16%)	0	0	0	0	0	1	0	0
9.2	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.16%)	0	0	0	0	0	1	0	0
34.7	transport.phosphate	1 (0.16%)	0	0	1	0	0	0	0	0
9.2.1	mitochondrial electron transport / ATP synthesis.NADH-DH.type II	1 (0.16%)	0	0	0	0	0	1	0	0
9.2.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.type II.external	1 (0.16%)	0	0	0	0	0	1	0	0