PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_82
Name: ACGTSEED3
Description: ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site

#Associated genes: 12
#Associated GO terms: 211

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	gma	ptr	ppe	vvi
GO:0005488	binding	4 (33.33%)	1	2	1	0
GO:0003824	catalytic activity	4 (33.33%)	0	2	1	1
GO:0016787	hydrolase activity	4 (33.33%)	0	2	1	1
GO:1901363	heterocyclic compound binding	3 (25.00%)	1	2	0	0
GO:0097159	organic cyclic compound binding	3 (25.00%)	1	2	0	0
GO:0005524	ATP binding	2 (16.67%)	0	2	0	0
GO:0030554	adenyl nucleotide binding	2 (16.67%)	0	2	0	0
GO:0032559	adenyl ribonucleotide binding	2 (16.67%)	0	2	0	0
GO:0043168	anion binding	2 (16.67%)	0	2	0	0
GO:0097367	carbohydrate derivative binding	2 (16.67%)	0	2	0	0
GO:0043169	cation binding	2 (16.67%)	0	2	0	0
GO:0004175	endopeptidase activity	2 (16.67%)	0	2	0	0
GO:0016817	hydrolase activity, acting on acid anhydrides	2 (16.67%)	0	2	0	0
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2 (16.67%)	0	2	0	0
GO:0016788	hydrolase activity, acting on ester bonds	2 (16.67%)	0	0	1	1
GO:0043167	ion binding	2 (16.67%)	0	2	0	0
GO:0046872	metal ion binding	2 (16.67%)	0	2	0	0
GO:0004222	metalloendopeptidase activity	2 (16.67%)	0	2	0	0
GO:0008237	metallopeptidase activity	2 (16.67%)	0	2	0	0
GO:0001882	nucleoside binding	2 (16.67%)	0	2	0	0
GO:1901265	nucleoside phosphate binding	2 (16.67%)	0	2	0	0
GO:0017111	nucleoside-triphosphatase activity	2 (16.67%)	0	2	0	0
GO:0000166	nucleotide binding	2 (16.67%)	0	2	0	0
GO:0008233	peptidase activity	2 (16.67%)	0	2	0	0
GO:0070011	peptidase activity, acting on L-amino acid peptides	2 (16.67%)	0	2	0	0
GO:0016791	phosphatase activity	2 (16.67%)	0	0	1	1
GO:0004721	phosphoprotein phosphatase activity	2 (16.67%)	0	0	1	1
GO:0042578	phosphoric ester hydrolase activity	2 (16.67%)	0	0	1	1
GO:0004725	protein tyrosine phosphatase activity	2 (16.67%)	0	0	1	1
GO:0001883	purine nucleoside binding	2 (16.67%)	0	2	0	0
GO:0017076	purine nucleotide binding	2 (16.67%)	0	2	0	0
GO:0032550	purine ribonucleoside binding	2 (16.67%)	0	2	0	0
GO:0035639	purine ribonucleoside triphosphate binding	2 (16.67%)	0	2	0	0
GO:0032555	purine ribonucleotide binding	2 (16.67%)	0	2	0	0
GO:0016462	pyrophosphatase activity	2 (16.67%)	0	2	0	0
GO:0032549	ribonucleoside binding	2 (16.67%)	0	2	0	0
GO:0032553	ribonucleotide binding	2 (16.67%)	0	2	0	0
GO:0036094	small molecule binding	2 (16.67%)	0	2	0	0
GO:0046914	transition metal ion binding	2 (16.67%)	0	2	0	0
GO:0008270	zinc ion binding	2 (16.67%)	0	2	0	0
GO:0016887	ATPase activity	1 (8.33%)	0	1	0	0
GO:0003677	DNA binding	1 (8.33%)	1	0	0	0
GO:0003779	actin binding	1 (8.33%)	0	0	1	0
GO:0008092	cytoskeletal protein binding	1 (8.33%)	0	0	1	0
GO:0003676	nucleic acid binding	1 (8.33%)	1	0	0	0
GO:0001071	nucleic acid binding transcription factor activity	1 (8.33%)	1	0	0	0
GO:0005515	protein binding	1 (8.33%)	0	0	1	0
GO:0043565	sequence-specific DNA binding	1 (8.33%)	1	0	0	0
GO:0003700	sequence-specific DNA binding transcription factor activity	1 (8.33%)	1	0	0	0

Biological Process (back to top)

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GO	Description	#Associated genes	gma	ptr	ppe	vvi
GO:0009987	cellular process	5 (41.67%)	1	1	2	1
GO:0008152	metabolic process	5 (41.67%)	1	2	1	1
GO:0065007	biological regulation	4 (33.33%)	1	1	1	1
GO:0044237	cellular metabolic process	4 (33.33%)	1	1	1	1
GO:0050789	regulation of biological process	4 (33.33%)	1	1	1	1
GO:0043170	macromolecule metabolic process	3 (25.00%)	1	2	0	0
GO:0071704	organic substance metabolic process	3 (25.00%)	1	2	0	0
GO:0044238	primary metabolic process	3 (25.00%)	1	2	0	0
GO:0050896	response to stimulus	3 (25.00%)	0	1	1	1
GO:0016043	cellular component organization	2 (16.67%)	0	1	1	0
GO:0071840	cellular component organization or biogenesis	2 (16.67%)	0	1	1	0
GO:0044260	cellular macromolecule metabolic process	2 (16.67%)	1	1	0	0
GO:0006952	defense response	2 (16.67%)	0	0	1	1
GO:0042742	defense response to bacterium	2 (16.67%)	0	0	1	1
GO:0098542	defense response to other organism	2 (16.67%)	0	0	1	1
GO:0016311	dephosphorylation	2 (16.67%)	0	0	1	1
GO:0051704	multi-organism process	2 (16.67%)	0	0	1	1
GO:0006996	organelle organization	2 (16.67%)	0	1	1	0
GO:0006796	phosphate-containing compound metabolic process	2 (16.67%)	0	0	1	1
GO:0006793	phosphorus metabolic process	2 (16.67%)	0	0	1	1
GO:0019538	protein metabolic process	2 (16.67%)	0	2	0	0
GO:0006508	proteolysis	2 (16.67%)	0	2	0	0
GO:0031323	regulation of cellular metabolic process	2 (16.67%)	1	1	0	0
GO:0050794	regulation of cellular process	2 (16.67%)	1	1	0	0
GO:0031347	regulation of defense response	2 (16.67%)	0	0	1	1
GO:1900424	regulation of defense response to bacterium	2 (16.67%)	0	0	1	1
GO:0019222	regulation of metabolic process	2 (16.67%)	1	1	0	0
GO:0043900	regulation of multi-organism process	2 (16.67%)	0	0	1	1
GO:0002831	regulation of response to biotic stimulus	2 (16.67%)	0	0	1	1
GO:0048583	regulation of response to stimulus	2 (16.67%)	0	0	1	1
GO:0080134	regulation of response to stress	2 (16.67%)	0	0	1	1
GO:0009617	response to bacterium	2 (16.67%)	0	0	1	1
GO:0009607	response to biotic stimulus	2 (16.67%)	0	0	1	1
GO:0051707	response to other organism	2 (16.67%)	0	0	1	1
GO:0006950	response to stress	2 (16.67%)	0	0	1	1
GO:0044763	single-organism cellular process	2 (16.67%)	0	1	1	0
GO:0044699	single-organism process	2 (16.67%)	0	1	1	0
GO:0010304	PSII associated light-harvesting complex II catabolic process	1 (8.33%)	0	1	0	0
GO:0032774	RNA biosynthetic process	1 (8.33%)	1	0	0	0
GO:0016070	RNA metabolic process	1 (8.33%)	1	0	0	0
GO:0030036	actin cytoskeleton organization	1 (8.33%)	0	0	1	0
GO:0030042	actin filament depolymerization	1 (8.33%)	0	0	1	0
GO:0007015	actin filament organization	1 (8.33%)	0	0	1	0
GO:0030029	actin filament-based process	1 (8.33%)	0	0	1	0
GO:0008154	actin polymerization or depolymerization	1 (8.33%)	0	0	1	0
GO:0019438	aromatic compound biosynthetic process	1 (8.33%)	1	0	0	0
GO:0009058	biosynthetic process	1 (8.33%)	1	0	0	0
GO:0009056	catabolic process	1 (8.33%)	0	1	0	0
GO:0006725	cellular aromatic compound metabolic process	1 (8.33%)	1	0	0	0
GO:0044249	cellular biosynthetic process	1 (8.33%)	1	0	0	0
GO:0044248	cellular catabolic process	1 (8.33%)	0	1	0	0
GO:0022411	cellular component disassembly	1 (8.33%)	0	0	1	0
GO:0034645	cellular macromolecule biosynthetic process	1 (8.33%)	1	0	0	0
GO:0044265	cellular macromolecule catabolic process	1 (8.33%)	0	1	0	0
GO:0044271	cellular nitrogen compound biosynthetic process	1 (8.33%)	1	0	0	0
GO:0034641	cellular nitrogen compound metabolic process	1 (8.33%)	1	0	0	0
GO:0044257	cellular protein catabolic process	1 (8.33%)	0	1	0	0
GO:0043624	cellular protein complex disassembly	1 (8.33%)	0	0	1	0
GO:0044267	cellular protein metabolic process	1 (8.33%)	0	1	0	0
GO:0007010	cytoskeleton organization	1 (8.33%)	0	0	1	0
GO:0022900	electron transport chain	1 (8.33%)	0	1	0	0
GO:0010467	gene expression	1 (8.33%)	1	0	0	0
GO:0006091	generation of precursor metabolites and energy	1 (8.33%)	0	1	0	0
GO:0018130	heterocycle biosynthetic process	1 (8.33%)	1	0	0	0
GO:0046483	heterocycle metabolic process	1 (8.33%)	1	0	0	0
GO:0032984	macromolecular complex disassembly	1 (8.33%)	0	0	1	0
GO:0043933	macromolecular complex subunit organization	1 (8.33%)	0	0	1	0
GO:0009059	macromolecule biosynthetic process	1 (8.33%)	1	0	0	0
GO:0009057	macromolecule catabolic process	1 (8.33%)	0	1	0	0
GO:0061024	membrane organization	1 (8.33%)	0	1	0	0
GO:0048519	negative regulation of biological process	1 (8.33%)	0	1	0	0
GO:0031324	negative regulation of cellular metabolic process	1 (8.33%)	0	1	0	0
GO:0048523	negative regulation of cellular process	1 (8.33%)	0	1	0	0
GO:0009892	negative regulation of metabolic process	1 (8.33%)	0	1	0	0
GO:0043155	negative regulation of photosynthesis, light reaction	1 (8.33%)	0	1	0	0
GO:0006807	nitrogen compound metabolic process	1 (8.33%)	1	0	0	0
GO:0090304	nucleic acid metabolic process	1 (8.33%)	1	0	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (8.33%)	1	0	0	0
GO:0006139	nucleobase-containing compound metabolic process	1 (8.33%)	1	0	0	0
GO:1901362	organic cyclic compound biosynthetic process	1 (8.33%)	1	0	0	0
GO:1901360	organic cyclic compound metabolic process	1 (8.33%)	1	0	0	0
GO:1901576	organic substance biosynthetic process	1 (8.33%)	1	0	0	0
GO:1901575	organic substance catabolic process	1 (8.33%)	0	1	0	0
GO:0055114	oxidation-reduction process	1 (8.33%)	0	1	0	0
GO:0010205	photoinhibition	1 (8.33%)	0	1	0	0
GO:0015979	photosynthesis	1 (8.33%)	0	1	0	0
GO:0009765	photosynthesis, light harvesting	1 (8.33%)	0	1	0	0
GO:0019684	photosynthesis, light reaction	1 (8.33%)	0	1	0	0
GO:0009767	photosynthetic electron transport chain	1 (8.33%)	0	1	0	0
GO:0010206	photosystem II repair	1 (8.33%)	0	1	0	0
GO:0009668	plastid membrane organization	1 (8.33%)	0	1	0	0
GO:0009657	plastid organization	1 (8.33%)	0	1	0	0
GO:0030163	protein catabolic process	1 (8.33%)	0	1	0	0
GO:0043241	protein complex disassembly	1 (8.33%)	0	0	1	0
GO:0071822	protein complex subunit organization	1 (8.33%)	0	0	1	0
GO:0051261	protein depolymerization	1 (8.33%)	0	0	1	0
GO:0030091	protein repair	1 (8.33%)	0	1	0	0
GO:0072593	reactive oxygen species metabolic process	1 (8.33%)	0	1	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (8.33%)	1	0	0	0
GO:0051252	regulation of RNA metabolic process	1 (8.33%)	1	0	0	0
GO:0009889	regulation of biosynthetic process	1 (8.33%)	1	0	0	0
GO:0031326	regulation of cellular biosynthetic process	1 (8.33%)	1	0	0	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (8.33%)	1	0	0	0
GO:0010468	regulation of gene expression	1 (8.33%)	1	0	0	0
GO:0043467	regulation of generation of precursor metabolites and energy	1 (8.33%)	0	1	0	0
GO:0010556	regulation of macromolecule biosynthetic process	1 (8.33%)	1	0	0	0
GO:0060255	regulation of macromolecule metabolic process	1 (8.33%)	1	0	0	0
GO:0051171	regulation of nitrogen compound metabolic process	1 (8.33%)	1	0	0	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (8.33%)	1	0	0	0
GO:0010109	regulation of photosynthesis	1 (8.33%)	0	1	0	0
GO:0042548	regulation of photosynthesis, light reaction	1 (8.33%)	0	1	0	0
GO:0080090	regulation of primary metabolic process	1 (8.33%)	1	0	0	0
GO:0006355	regulation of transcription, DNA-dependent	1 (8.33%)	1	0	0	0
GO:0009628	response to abiotic stimulus	1 (8.33%)	0	1	0	0
GO:0009644	response to high light intensity	1 (8.33%)	0	1	0	0
GO:0009642	response to light intensity	1 (8.33%)	0	1	0	0
GO:0009416	response to light stimulus	1 (8.33%)	0	1	0	0
GO:0009314	response to radiation	1 (8.33%)	0	1	0	0
GO:0044802	single-organism membrane organization	1 (8.33%)	0	1	0	0
GO:0044710	single-organism metabolic process	1 (8.33%)	0	1	0	0
GO:0010027	thylakoid membrane organization	1 (8.33%)	0	1	0	0
GO:0006351	transcription, DNA-templated	1 (8.33%)	1	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	ptr	ppe
GO:0005623	cell	3 (25.00%)	1	2
GO:0044464	cell part	3 (25.00%)	1	2
GO:0016021	integral to membrane	3 (25.00%)	2	1
GO:0005622	intracellular	3 (25.00%)	1	2
GO:0043229	intracellular organelle	3 (25.00%)	1	2
GO:0044424	intracellular part	3 (25.00%)	1	2
GO:0031224	intrinsic to membrane	3 (25.00%)	2	1
GO:0016020	membrane	3 (25.00%)	2	1
GO:0044425	membrane part	3 (25.00%)	2	1
GO:0043226	organelle	3 (25.00%)	1	2
GO:0005737	cytoplasm	2 (16.67%)	1	1
GO:0044444	cytoplasmic part	2 (16.67%)	1	1
GO:0043231	intracellular membrane-bounded organelle	2 (16.67%)	1	1
GO:0043227	membrane-bounded organelle	2 (16.67%)	1	1
GO:0015629	actin cytoskeleton	1 (8.33%)	0	1
GO:0009507	chloroplast	1 (8.33%)	1	0
GO:0009941	chloroplast envelope	1 (8.33%)	1	0
GO:0044434	chloroplast part	1 (8.33%)	1	0
GO:0009534	chloroplast thylakoid	1 (8.33%)	1	0
GO:0009535	chloroplast thylakoid membrane	1 (8.33%)	1	0
GO:0005856	cytoskeleton	1 (8.33%)	0	1
GO:0031975	envelope	1 (8.33%)	1	0
GO:0043232	intracellular non-membrane-bounded organelle	1 (8.33%)	0	1
GO:0044446	intracellular organelle part	1 (8.33%)	1	0
GO:0005811	lipid particle	1 (8.33%)	0	1
GO:0012511	monolayer-surrounded lipid storage body	1 (8.33%)	0	1
GO:0043228	non-membrane-bounded organelle	1 (8.33%)	0	1
GO:0031967	organelle envelope	1 (8.33%)	1	0
GO:0044422	organelle part	1 (8.33%)	1	0
GO:0031984	organelle subcompartment	1 (8.33%)	1	0
GO:0034357	photosynthetic membrane	1 (8.33%)	1	0
GO:0009536	plastid	1 (8.33%)	1	0
GO:0009526	plastid envelope	1 (8.33%)	1	0
GO:0044435	plastid part	1 (8.33%)	1	0
GO:0031976	plastid thylakoid	1 (8.33%)	1	0
GO:0055035	plastid thylakoid membrane	1 (8.33%)	1	0
GO:0009579	thylakoid	1 (8.33%)	1	0
GO:0031977	thylakoid lumen	1 (8.33%)	1	0
GO:0042651	thylakoid membrane	1 (8.33%)	1	0
GO:0044436	thylakoid part	1 (8.33%)	1	0