PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_74
Name: HY5
Description: Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression

#Associated genes: 7
#Associated GO terms: 155

Biological Process
Molecular Function
Cellular Component

Show species without binding site experiments

Biological Process (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	egr	gma	ptr	sly	stu	vvi
GO:0008152	metabolic process	6 (85.71%)	1	1	1	1	1	1
GO:0071704	organic substance metabolic process	6 (85.71%)	1	1	1	1	1	1
GO:0044237	cellular metabolic process	5 (71.43%)	0	1	1	1	1	1
GO:0009987	cellular process	5 (71.43%)	0	1	1	1	1	1
GO:0044238	primary metabolic process	5 (71.43%)	1	1	1	1	1	0
GO:0044260	cellular macromolecule metabolic process	4 (57.14%)	0	1	1	1	1	0
GO:0043170	macromolecule metabolic process	4 (57.14%)	0	1	1	1	1	0
GO:0009058	biosynthetic process	3 (42.86%)	0	1	1	0	0	1
GO:0044249	cellular biosynthetic process	3 (42.86%)	0	1	1	0	0	1
GO:0044267	cellular protein metabolic process	3 (42.86%)	0	0	1	1	1	0
GO:1901576	organic substance biosynthetic process	3 (42.86%)	0	1	1	0	0	1
GO:0019538	protein metabolic process	3 (42.86%)	0	0	1	1	1	0
GO:0019438	aromatic compound biosynthetic process	2 (28.57%)	0	1	0	0	0	1
GO:0005975	carbohydrate metabolic process	2 (28.57%)	1	0	1	0	0	0
GO:0006725	cellular aromatic compound metabolic process	2 (28.57%)	0	1	0	0	0	1
GO:0034645	cellular macromolecule biosynthetic process	2 (28.57%)	0	1	1	0	0	0
GO:0009059	macromolecule biosynthetic process	2 (28.57%)	0	1	1	0	0	0
GO:1901362	organic cyclic compound biosynthetic process	2 (28.57%)	0	1	0	0	0	1
GO:1901360	organic cyclic compound metabolic process	2 (28.57%)	0	1	0	0	0	1
GO:0006457	protein folding	2 (28.57%)	0	0	0	1	1	0
GO:0044763	single-organism cellular process	2 (28.57%)	0	0	1	0	0	1
GO:0044710	single-organism metabolic process	2 (28.57%)	0	0	1	0	0	1
GO:0044699	single-organism process	2 (28.57%)	0	0	1	0	0	1
GO:0032774	RNA biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0016070	RNA metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0065007	biological regulation	1 (14.29%)	0	1	0	0	0	0
GO:1901137	carbohydrate derivative biosynthetic process	1 (14.29%)	0	0	1	0	0	0
GO:1901135	carbohydrate derivative metabolic process	1 (14.29%)	0	0	1	0	0	0
GO:0044271	cellular nitrogen compound biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0034641	cellular nitrogen compound metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0006464	cellular protein modification process	1 (14.29%)	0	0	1	0	0	0
GO:0010467	gene expression	1 (14.29%)	0	1	0	0	0	0
GO:0009101	glycoprotein biosynthetic process	1 (14.29%)	0	0	1	0	0	0
GO:0009100	glycoprotein metabolic process	1 (14.29%)	0	0	1	0	0	0
GO:0070085	glycosylation	1 (14.29%)	0	0	1	0	0	0
GO:0018130	heterocycle biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0046483	heterocycle metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0009809	lignin biosynthetic process	1 (14.29%)	0	0	0	0	0	1
GO:0009808	lignin metabolic process	1 (14.29%)	0	0	0	0	0	1
GO:0043413	macromolecule glycosylation	1 (14.29%)	0	0	1	0	0	0
GO:0043412	macromolecule modification	1 (14.29%)	0	0	1	0	0	0
GO:0006807	nitrogen compound metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0090304	nucleic acid metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0006139	nucleobase-containing compound metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0055114	oxidation-reduction process	1 (14.29%)	0	0	0	0	0	1
GO:0009699	phenylpropanoid biosynthetic process	1 (14.29%)	0	0	0	0	0	1
GO:0009698	phenylpropanoid metabolic process	1 (14.29%)	0	0	0	0	0	1
GO:0006471	protein ADP-ribosylation	1 (14.29%)	0	0	1	0	0	0
GO:0006486	protein glycosylation	1 (14.29%)	0	0	1	0	0	0
GO:0036211	protein modification process	1 (14.29%)	0	0	1	0	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0051252	regulation of RNA metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0050789	regulation of biological process	1 (14.29%)	0	1	0	0	0	0
GO:0009889	regulation of biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0031326	regulation of cellular biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0031323	regulation of cellular metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0050794	regulation of cellular process	1 (14.29%)	0	1	0	0	0	0
GO:0010468	regulation of gene expression	1 (14.29%)	0	1	0	0	0	0
GO:0010556	regulation of macromolecule biosynthetic process	1 (14.29%)	0	1	0	0	0	0
GO:0060255	regulation of macromolecule metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0019222	regulation of metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0051171	regulation of nitrogen compound metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0080090	regulation of primary metabolic process	1 (14.29%)	0	1	0	0	0	0
GO:0006355	regulation of transcription, DNA-dependent	1 (14.29%)	0	1	0	0	0	0
GO:0009411	response to UV	1 (14.29%)	0	0	0	0	0	1
GO:0010224	response to UV-B	1 (14.29%)	0	0	0	0	0	1
GO:0009628	response to abiotic stimulus	1 (14.29%)	0	0	0	0	0	1
GO:0009416	response to light stimulus	1 (14.29%)	0	0	0	0	0	1
GO:0009314	response to radiation	1 (14.29%)	0	0	0	0	0	1
GO:0050896	response to stimulus	1 (14.29%)	0	0	0	0	0	1
GO:0019748	secondary metabolic process	1 (14.29%)	0	0	0	0	0	1
GO:0044550	secondary metabolite biosynthetic process	1 (14.29%)	0	0	0	0	0	1
GO:0044711	single-organism biosynthetic process	1 (14.29%)	0	0	0	0	0	1
GO:0044723	single-organism carbohydrate metabolic process	1 (14.29%)	0	0	1	0	0	0
GO:0006351	transcription, DNA-templated	1 (14.29%)	0	1	0	0	0	0

Molecular Function (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	egr	gma	ptr	sly	stu	vvi
GO:0003824	catalytic activity	5 (71.43%)	1	0	1	1	1	1
GO:0005488	binding	4 (57.14%)	1	1	1	0	0	1
GO:1901363	heterocyclic compound binding	3 (42.86%)	0	1	1	0	0	1
GO:0097159	organic cyclic compound binding	3 (42.86%)	0	1	1	0	0	1
GO:0016859	cis-trans isomerase activity	2 (28.57%)	0	0	0	1	1	0
GO:0016853	isomerase activity	2 (28.57%)	0	0	0	1	1	0
GO:0003676	nucleic acid binding	2 (28.57%)	0	1	1	0	0	0
GO:0003755	peptidyl-prolyl cis-trans isomerase activity	2 (28.57%)	0	0	0	1	1	0
GO:0003677	DNA binding	1 (14.29%)	0	1	0	0	0	0
GO:0003950	NAD+ ADP-ribosyltransferase activity	1 (14.29%)	0	0	1	0	0	0
GO:0030246	carbohydrate binding	1 (14.29%)	1	0	0	0	0	0
GO:0043169	cation binding	1 (14.29%)	0	0	0	0	0	1
GO:0046424	ferulate 5-hydroxylase activity	1 (14.29%)	0	0	0	0	0	1
GO:0020037	heme binding	1 (14.29%)	0	0	0	0	0	1
GO:0016787	hydrolase activity	1 (14.29%)	1	0	0	0	0	0
GO:0016798	hydrolase activity, acting on glycosyl bonds	1 (14.29%)	1	0	0	0	0	0
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	1 (14.29%)	1	0	0	0	0	0
GO:0043167	ion binding	1 (14.29%)	0	0	0	0	0	1
GO:0005506	iron ion binding	1 (14.29%)	0	0	0	0	0	1
GO:0046872	metal ion binding	1 (14.29%)	0	0	0	0	0	1
GO:0004497	monooxygenase activity	1 (14.29%)	0	0	0	0	0	1
GO:0001071	nucleic acid binding transcription factor activity	1 (14.29%)	0	1	0	0	0	0
GO:0016491	oxidoreductase activity	1 (14.29%)	0	0	0	0	0	1
GO:0016651	oxidoreductase activity, acting on NAD(P)H	1 (14.29%)	0	0	0	0	0	1
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 (14.29%)	0	0	0	0	0	1
GO:0043565	sequence-specific DNA binding	1 (14.29%)	0	1	0	0	0	0
GO:0003700	sequence-specific DNA binding transcription factor activity	1 (14.29%)	0	1	0	0	0	0
GO:0046906	tetrapyrrole binding	1 (14.29%)	0	0	0	0	0	1
GO:0016740	transferase activity	1 (14.29%)	0	0	1	0	0	0
GO:0016757	transferase activity, transferring glycosyl groups	1 (14.29%)	0	0	1	0	0	0
GO:0016763	transferase activity, transferring pentosyl groups	1 (14.29%)	0	0	1	0	0	0
GO:0046914	transition metal ion binding	1 (14.29%)	0	0	0	0	0	1

Cellular Component (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	egr	ptr	ppe	sly	stu	vvi
GO:0005623	cell	5 (71.43%)	1	1	1	1	0	1
GO:0044464	cell part	5 (71.43%)	1	1	1	1	0	1
GO:0005622	intracellular	5 (71.43%)	1	1	1	1	0	1
GO:0043231	intracellular membrane-bounded organelle	5 (71.43%)	1	1	1	1	0	1
GO:0043229	intracellular organelle	5 (71.43%)	1	1	1	1	0	1
GO:0044424	intracellular part	5 (71.43%)	1	1	1	1	0	1
GO:0043227	membrane-bounded organelle	5 (71.43%)	1	1	1	1	0	1
GO:0043226	organelle	5 (71.43%)	1	1	1	1	0	1
GO:0005634	nucleus	3 (42.86%)	0	1	1	1	0	0
GO:0030054	cell junction	2 (28.57%)	0	0	0	1	1	0
GO:0005911	cell-cell junction	2 (28.57%)	0	0	0	1	1	0
GO:0005737	cytoplasm	2 (28.57%)	1	0	0	0	0	1
GO:0044444	cytoplasmic part	2 (28.57%)	1	0	0	0	0	1
GO:0009506	plasmodesma	2 (28.57%)	0	0	0	1	1	0
GO:0055044	symplast	2 (28.57%)	0	0	0	1	1	0
GO:0033202	DNA helicase complex	1 (14.29%)	0	0	1	0	0	0
GO:0097346	INO80-type complex	1 (14.29%)	0	0	1	0	0	0
GO:0031011	Ino80 complex	1 (14.29%)	0	0	1	0	0	0
GO:0070603	SWI/SNF superfamily-type complex	1 (14.29%)	0	0	1	0	0	0
GO:0048046	apoplast	1 (14.29%)	1	0	0	0	0	0
GO:1902494	catalytic complex	1 (14.29%)	0	0	1	0	0	0
GO:0071944	cell periphery	1 (14.29%)	1	0	0	0	0	0
GO:0005618	cell wall	1 (14.29%)	1	0	0	0	0	0
GO:0000785	chromatin	1 (14.29%)	0	0	1	0	0	0
GO:0044427	chromosomal part	1 (14.29%)	0	0	1	0	0	0
GO:0005694	chromosome	1 (14.29%)	0	0	1	0	0	0
GO:0005783	endoplasmic reticulum	1 (14.29%)	0	0	0	0	0	1
GO:0030312	external encapsulating structure	1 (14.29%)	1	0	0	0	0	0
GO:0005576	extracellular region	1 (14.29%)	1	0	0	0	0	0
GO:0043232	intracellular non-membrane-bounded organelle	1 (14.29%)	0	0	1	0	0	0
GO:0070013	intracellular organelle lumen	1 (14.29%)	0	0	1	0	0	0
GO:0044446	intracellular organelle part	1 (14.29%)	0	0	1	0	0	0
GO:0032991	macromolecular complex	1 (14.29%)	0	0	1	0	0	0
GO:0031974	membrane-enclosed lumen	1 (14.29%)	0	0	1	0	0	0
GO:0043228	non-membrane-bounded organelle	1 (14.29%)	0	0	1	0	0	0
GO:0000790	nuclear chromatin	1 (14.29%)	0	0	1	0	0	0
GO:0000228	nuclear chromosome	1 (14.29%)	0	0	1	0	0	0
GO:0044454	nuclear chromosome part	1 (14.29%)	0	0	1	0	0	0
GO:0031981	nuclear lumen	1 (14.29%)	0	0	1	0	0	0
GO:0044428	nuclear part	1 (14.29%)	0	0	1	0	0	0
GO:0043233	organelle lumen	1 (14.29%)	0	0	1	0	0	0
GO:0044422	organelle part	1 (14.29%)	0	0	1	0	0	0
GO:0009505	plant-type cell wall	1 (14.29%)	1	0	0	0	0	0
GO:0043234	protein complex	1 (14.29%)	0	0	1	0	0	0
GO:0005773	vacuole	1 (14.29%)	1	0	0	0	0	0