PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_670
Name: E2Fb;E2Fc;E2Fd;E2Fe;E2Fa
Description: The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities

#Associated genes: 7
#Associated GO terms: 179

Biological Process
Molecular Function
Cellular Component

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Cellular Component (back to top)

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GO	Description	#Associated genes	ppe	sly	stu
GO:0005623	cell	3 (42.86%)	1	1	1
GO:0044464	cell part	3 (42.86%)	1	1	1
GO:0005622	intracellular	3 (42.86%)	1	1	1
GO:0044424	intracellular part	3 (42.86%)	1	1	1
GO:0005737	cytoplasm	2 (28.57%)	0	1	1
GO:1902494	catalytic complex	1 (14.29%)	0	0	1
GO:0044444	cytoplasmic part	1 (14.29%)	0	0	1
GO:0016021	integral to membrane	1 (14.29%)	1	0	0
GO:0043231	intracellular membrane-bounded organelle	1 (14.29%)	1	0	0
GO:0043232	intracellular non-membrane-bounded organelle	1 (14.29%)	1	0	0
GO:0043229	intracellular organelle	1 (14.29%)	1	0	0
GO:0070013	intracellular organelle lumen	1 (14.29%)	1	0	0
GO:0044446	intracellular organelle part	1 (14.29%)	1	0	0
GO:0031224	intrinsic to membrane	1 (14.29%)	1	0	0
GO:0032991	macromolecular complex	1 (14.29%)	0	0	1
GO:0016020	membrane	1 (14.29%)	1	0	0
GO:0044425	membrane part	1 (14.29%)	1	0	0
GO:0043227	membrane-bounded organelle	1 (14.29%)	1	0	0
GO:0031974	membrane-enclosed lumen	1 (14.29%)	1	0	0
GO:0043228	non-membrane-bounded organelle	1 (14.29%)	1	0	0
GO:0031981	nuclear lumen	1 (14.29%)	1	0	0
GO:0044428	nuclear part	1 (14.29%)	1	0	0
GO:0005730	nucleolus	1 (14.29%)	1	0	0
GO:0005634	nucleus	1 (14.29%)	1	0	0
GO:0043226	organelle	1 (14.29%)	1	0	0
GO:0043233	organelle lumen	1 (14.29%)	1	0	0
GO:0044422	organelle part	1 (14.29%)	1	0	0
GO:1990204	oxidoreductase complex	1 (14.29%)	0	0	1
GO:0043234	protein complex	1 (14.29%)	0	0	1
GO:0005971	ribonucleoside-diphosphate reductase complex	1 (14.29%)	0	0	1

Molecular Function (back to top)

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GO	Description	#Associated genes	ptr	ppe	sly	stu
GO:0005488	binding	5 (71.43%)	2	1	1	1
GO:0005524	ATP binding	3 (42.86%)	2	0	0	1
GO:0030554	adenyl nucleotide binding	3 (42.86%)	2	0	0	1
GO:0032559	adenyl ribonucleotide binding	3 (42.86%)	2	0	0	1
GO:0043168	anion binding	3 (42.86%)	2	0	0	1
GO:0097367	carbohydrate derivative binding	3 (42.86%)	2	0	0	1
GO:1901363	heterocyclic compound binding	3 (42.86%)	2	0	0	1
GO:0043167	ion binding	3 (42.86%)	2	0	0	1
GO:0001882	nucleoside binding	3 (42.86%)	2	0	0	1
GO:1901265	nucleoside phosphate binding	3 (42.86%)	2	0	0	1
GO:0000166	nucleotide binding	3 (42.86%)	2	0	0	1
GO:0097159	organic cyclic compound binding	3 (42.86%)	2	0	0	1
GO:0005515	protein binding	3 (42.86%)	1	1	1	0
GO:0001883	purine nucleoside binding	3 (42.86%)	2	0	0	1
GO:0017076	purine nucleotide binding	3 (42.86%)	2	0	0	1
GO:0032550	purine ribonucleoside binding	3 (42.86%)	2	0	0	1
GO:0035639	purine ribonucleoside triphosphate binding	3 (42.86%)	2	0	0	1
GO:0032555	purine ribonucleotide binding	3 (42.86%)	2	0	0	1
GO:0032549	ribonucleoside binding	3 (42.86%)	2	0	0	1
GO:0032553	ribonucleotide binding	3 (42.86%)	2	0	0	1
GO:0036094	small molecule binding	3 (42.86%)	2	0	0	1
GO:0003677	DNA binding	2 (28.57%)	2	0	0	0
GO:0003824	catalytic activity	2 (28.57%)	1	0	0	1
GO:0003690	double-stranded DNA binding	2 (28.57%)	2	0	0	0
GO:0030983	mismatched DNA binding	2 (28.57%)	2	0	0	0
GO:0003676	nucleic acid binding	2 (28.57%)	2	0	0	0
GO:0016491	oxidoreductase activity	2 (28.57%)	1	0	0	1
GO:0043566	structure-specific DNA binding	2 (28.57%)	2	0	0	0
GO:0050136	NADH dehydrogenase (quinone) activity	1 (14.29%)	1	0	0	0
GO:0008137	NADH dehydrogenase (ubiquinone) activity	1 (14.29%)	1	0	0	0
GO:0003954	NADH dehydrogenase activity	1 (14.29%)	1	0	0	0
GO:0003684	damaged DNA binding	1 (14.29%)	1	0	0	0
GO:0031072	heat shock protein binding	1 (14.29%)	0	0	1	0
GO:0042802	identical protein binding	1 (14.29%)	0	1	0	0
GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	1 (14.29%)	0	0	0	1
GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	1 (14.29%)	0	0	0	1
GO:0016651	oxidoreductase activity, acting on NAD(P)H	1 (14.29%)	1	0	0	0
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1 (14.29%)	1	0	0	0
GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	1 (14.29%)	0	0	0	1

Biological Process (back to top)

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GO	Description	#Associated genes	ptr	ppe	sly	stu
GO:0009987	cellular process	6 (85.71%)	3	1	1	1
GO:0044763	single-organism cellular process	6 (85.71%)	3	1	1	1
GO:0044699	single-organism process	6 (85.71%)	3	1	1	1
GO:0044237	cellular metabolic process	5 (71.43%)	3	1	0	1
GO:0008152	metabolic process	5 (71.43%)	3	1	0	1
GO:0050896	response to stimulus	5 (71.43%)	2	1	1	1
GO:0044710	single-organism metabolic process	5 (71.43%)	3	1	0	1
GO:0006259	DNA metabolic process	4 (57.14%)	2	1	0	1
GO:0006725	cellular aromatic compound metabolic process	4 (57.14%)	2	1	0	1
GO:0044260	cellular macromolecule metabolic process	4 (57.14%)	2	1	0	1
GO:0034641	cellular nitrogen compound metabolic process	4 (57.14%)	2	1	0	1
GO:0051716	cellular response to stimulus	4 (57.14%)	2	1	1	0
GO:0046483	heterocycle metabolic process	4 (57.14%)	2	1	0	1
GO:0043170	macromolecule metabolic process	4 (57.14%)	2	1	0	1
GO:0006807	nitrogen compound metabolic process	4 (57.14%)	2	1	0	1
GO:0090304	nucleic acid metabolic process	4 (57.14%)	2	1	0	1
GO:0006139	nucleobase-containing compound metabolic process	4 (57.14%)	2	1	0	1
GO:1901360	organic cyclic compound metabolic process	4 (57.14%)	2	1	0	1
GO:0071704	organic substance metabolic process	4 (57.14%)	2	1	0	1
GO:0044238	primary metabolic process	4 (57.14%)	2	1	0	1
GO:0006281	DNA repair	3 (42.86%)	2	1	0	0
GO:0006974	cellular response to DNA damage stimulus	3 (42.86%)	2	1	0	0
GO:0033554	cellular response to stress	3 (42.86%)	2	1	0	0
GO:0006950	response to stress	3 (42.86%)	2	1	0	0
GO:0006298	mismatch repair	2 (28.57%)	2	0	0	0
GO:0055114	oxidation-reduction process	2 (28.57%)	1	0	0	1
GO:0006796	phosphate-containing compound metabolic process	2 (28.57%)	1	0	0	1
GO:0006793	phosphorus metabolic process	2 (28.57%)	1	0	0	1
GO:0009628	response to abiotic stimulus	2 (28.57%)	0	1	1	0
GO:0009314	response to radiation	2 (28.57%)	0	1	1	0
GO:0042773	ATP synthesis coupled electron transport	1 (14.29%)	1	0	0	0
GO:0006260	DNA replication	1 (14.29%)	0	0	0	1
GO:0030036	actin cytoskeleton organization	1 (14.29%)	0	0	1	0
GO:0007015	actin filament organization	1 (14.29%)	0	0	1	0
GO:0030029	actin filament-based process	1 (14.29%)	0	0	1	0
GO:0048856	anatomical structure development	1 (14.29%)	0	1	0	0
GO:0019438	aromatic compound biosynthetic process	1 (14.29%)	0	0	0	1
GO:0009058	biosynthetic process	1 (14.29%)	0	0	0	1
GO:0007049	cell cycle	1 (14.29%)	0	1	0	0
GO:0022402	cell cycle process	1 (14.29%)	0	1	0	0
GO:0044249	cellular biosynthetic process	1 (14.29%)	0	0	0	1
GO:0016043	cellular component organization	1 (14.29%)	0	0	1	0
GO:0071840	cellular component organization or biogenesis	1 (14.29%)	0	0	1	0
GO:0051641	cellular localization	1 (14.29%)	0	0	1	0
GO:0034645	cellular macromolecule biosynthetic process	1 (14.29%)	0	0	0	1
GO:0044271	cellular nitrogen compound biosynthetic process	1 (14.29%)	0	0	0	1
GO:0048610	cellular process involved in reproduction	1 (14.29%)	0	1	0	0
GO:0045333	cellular respiration	1 (14.29%)	1	0	0	0
GO:0071214	cellular response to abiotic stimulus	1 (14.29%)	0	0	1	0
GO:0071483	cellular response to blue light	1 (14.29%)	0	0	1	0
GO:0071482	cellular response to light stimulus	1 (14.29%)	0	0	1	0
GO:0071478	cellular response to radiation	1 (14.29%)	0	0	1	0
GO:0009904	chloroplast accumulation movement	1 (14.29%)	0	0	1	0
GO:0009903	chloroplast avoidance movement	1 (14.29%)	0	0	1	0
GO:0009658	chloroplast organization	1 (14.29%)	0	0	1	0
GO:0009902	chloroplast relocation	1 (14.29%)	0	0	1	0
GO:0007010	cytoskeleton organization	1 (14.29%)	0	0	1	0
GO:0009202	deoxyribonucleoside triphosphate biosynthetic process	1 (14.29%)	0	0	0	1
GO:0009200	deoxyribonucleoside triphosphate metabolic process	1 (14.29%)	0	0	0	1
GO:0032502	developmental process	1 (14.29%)	0	1	0	0
GO:0006302	double-strand break repair	1 (14.29%)	0	1	0	0
GO:0022900	electron transport chain	1 (14.29%)	1	0	0	0
GO:0009553	embryo sac development	1 (14.29%)	0	1	0	0
GO:0015980	energy derivation by oxidation of organic compounds	1 (14.29%)	1	0	0	0
GO:0051234	establishment of localization	1 (14.29%)	0	0	1	0
GO:0051649	establishment of localization in cell	1 (14.29%)	0	0	1	0
GO:0051656	establishment of organelle localization	1 (14.29%)	0	0	1	0
GO:0051667	establishment of plastid localization	1 (14.29%)	0	0	1	0
GO:0048229	gametophyte development	1 (14.29%)	0	1	0	0
GO:0006091	generation of precursor metabolites and energy	1 (14.29%)	1	0	0	0
GO:0018130	heterocycle biosynthetic process	1 (14.29%)	0	0	0	1
GO:0051179	localization	1 (14.29%)	0	0	1	0
GO:0043933	macromolecular complex subunit organization	1 (14.29%)	0	0	1	0
GO:0009059	macromolecule biosynthetic process	1 (14.29%)	0	0	0	1
GO:0007126	meiosis	1 (14.29%)	0	1	0	0
GO:0051321	meiotic cell cycle	1 (14.29%)	0	1	0	0
GO:0007275	multicellular organismal development	1 (14.29%)	0	1	0	0
GO:0032501	multicellular organismal process	1 (14.29%)	0	1	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (14.29%)	0	0	0	1
GO:0055086	nucleobase-containing small molecule metabolic process	1 (14.29%)	0	0	0	1
GO:1901293	nucleoside phosphate biosynthetic process	1 (14.29%)	0	0	0	1
GO:0006753	nucleoside phosphate metabolic process	1 (14.29%)	0	0	0	1
GO:0009142	nucleoside triphosphate biosynthetic process	1 (14.29%)	0	0	0	1
GO:0009141	nucleoside triphosphate metabolic process	1 (14.29%)	0	0	0	1
GO:0051640	organelle localization	1 (14.29%)	0	0	1	0
GO:0006996	organelle organization	1 (14.29%)	0	0	1	0
GO:1901362	organic cyclic compound biosynthetic process	1 (14.29%)	0	0	0	1
GO:1901576	organic substance biosynthetic process	1 (14.29%)	0	0	0	1
GO:0090407	organophosphate biosynthetic process	1 (14.29%)	0	0	0	1
GO:0019637	organophosphate metabolic process	1 (14.29%)	0	0	0	1
GO:0006119	oxidative phosphorylation	1 (14.29%)	1	0	0	0
GO:0016310	phosphorylation	1 (14.29%)	1	0	0	0
GO:0051644	plastid localization	1 (14.29%)	0	0	1	0
GO:0009657	plastid organization	1 (14.29%)	0	0	1	0
GO:0009555	pollen development	1 (14.29%)	0	1	0	0
GO:0071822	protein complex subunit organization	1 (14.29%)	0	0	1	0
GO:0006290	pyrimidine dimer repair	1 (14.29%)	1	0	0	0
GO:0000003	reproduction	1 (14.29%)	0	1	0	0
GO:0022904	respiratory electron transport chain	1 (14.29%)	1	0	0	0
GO:0009637	response to blue light	1 (14.29%)	0	0	1	0
GO:0046686	response to cadmium ion	1 (14.29%)	0	0	0	1
GO:0042221	response to chemical	1 (14.29%)	0	0	0	1
GO:0010035	response to inorganic substance	1 (14.29%)	0	0	0	1
GO:0010212	response to ionizing radiation	1 (14.29%)	0	1	0	0
GO:0009416	response to light stimulus	1 (14.29%)	0	0	1	0
GO:0010038	response to metal ion	1 (14.29%)	0	0	0	1
GO:0044707	single-multicellular organism process	1 (14.29%)	0	1	0	0
GO:0044711	single-organism biosynthetic process	1 (14.29%)	0	0	0	1
GO:0044767	single-organism developmental process	1 (14.29%)	0	1	0	0
GO:0044281	small molecule metabolic process	1 (14.29%)	0	0	0	1