Gene Ontology terms associated with a binding site

Binding site
Motif_651
Name
E2Fc;E2Fd;E2Fe;E2Fa
Description
The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants
#Associated genes
92
#Associated GO terms
499
 
Biological Process
Molecular Function
Cellular Component






Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process52 (56.52%)44338108246
GO:0008152metabolic process47 (51.09%)4534778135
GO:0071704organic substance metabolic process46 (50.00%)4434778135
GO:0044238primary metabolic process46 (50.00%)4434778135
GO:0043170macromolecule metabolic process43 (46.74%)3434678134
GO:0044237cellular metabolic process42 (45.65%)4423677135
GO:0044260cellular macromolecule metabolic process40 (43.48%)3423677134
GO:0044699single-organism process38 (41.30%)4331872244
GO:0006725cellular aromatic compound metabolic process35 (38.04%)3322666124
GO:0034641cellular nitrogen compound metabolic process35 (38.04%)3322666124
GO:0046483heterocycle metabolic process35 (38.04%)3322666124
GO:0006807nitrogen compound metabolic process35 (38.04%)3322666124
GO:0006139nucleobase-containing compound metabolic process35 (38.04%)3322666124
GO:1901360organic cyclic compound metabolic process35 (38.04%)3322666124
GO:0044763single-organism cellular process35 (38.04%)4231772234
GO:0090304nucleic acid metabolic process33 (35.87%)2322666123
GO:0050896response to stimulus25 (27.17%)3312453112
GO:0006259DNA metabolic process24 (26.09%)2312543121
GO:0044710single-organism metabolic process24 (26.09%)3321442122
GO:0065007biological regulation19 (20.65%)2210443111
GO:0051716cellular response to stimulus19 (20.65%)3211432111
GO:0050789regulation of biological process19 (20.65%)2210443111
GO:0050794regulation of cellular process19 (20.65%)2210443111
GO:0006950response to stress18 (19.57%)2311332111
GO:0006281DNA repair17 (18.48%)2211332111
GO:0009058biosynthetic process17 (18.48%)0211433012
GO:0006974cellular response to DNA damage stimulus17 (18.48%)2211332111
GO:0033554cellular response to stress17 (18.48%)2211332111
GO:0031323regulation of cellular metabolic process17 (18.48%)1210343111
GO:0060255regulation of macromolecule metabolic process17 (18.48%)1210343111
GO:0019222regulation of metabolic process17 (18.48%)1210343111
GO:0051171regulation of nitrogen compound metabolic process17 (18.48%)1210343111
GO:0019219regulation of nucleobase-containing compound metabolic process17 (18.48%)1210343111
GO:0080090regulation of primary metabolic process17 (18.48%)1210343111
GO:0044249cellular biosynthetic process16 (17.39%)0211333012
GO:1901576organic substance biosynthetic process16 (17.39%)0211333012
GO:0034645cellular macromolecule biosynthetic process15 (16.30%)0211333011
GO:0009059macromolecule biosynthetic process15 (16.30%)0211333011
GO:0019538protein metabolic process11 (11.96%)1122012011
GO:0016070RNA metabolic process10 (10.87%)0011123002
GO:0019438aromatic compound biosynthetic process10 (10.87%)0011222002
GO:0044271cellular nitrogen compound biosynthetic process10 (10.87%)0011222002
GO:0010467gene expression10 (10.87%)0110123002
GO:0018130heterocycle biosynthetic process10 (10.87%)0011222002
GO:1901362organic cyclic compound biosynthetic process10 (10.87%)0011222002
GO:0051054positive regulation of DNA metabolic process10 (10.87%)1200221110
GO:0045739positive regulation of DNA repair10 (10.87%)1200221110
GO:0048518positive regulation of biological process10 (10.87%)1200221110
GO:0031325positive regulation of cellular metabolic process10 (10.87%)1200221110
GO:0048522positive regulation of cellular process10 (10.87%)1200221110
GO:0010604positive regulation of macromolecule metabolic process10 (10.87%)1200221110
GO:0009893positive regulation of metabolic process10 (10.87%)1200221110
GO:0051173positive regulation of nitrogen compound metabolic process10 (10.87%)1200221110
GO:0045935positive regulation of nucleobase-containing compound metabolic process10 (10.87%)1200221110
GO:2001022positive regulation of response to DNA damage stimulus10 (10.87%)1200221110
GO:0048584positive regulation of response to stimulus10 (10.87%)1200221110
GO:0051052regulation of DNA metabolic process10 (10.87%)1200221110
GO:0006282regulation of DNA repair10 (10.87%)1200221110
GO:0080135regulation of cellular response to stress10 (10.87%)1200221110
GO:2001020regulation of response to DNA damage stimulus10 (10.87%)1200221110
GO:0048583regulation of response to stimulus10 (10.87%)1200221110
GO:0080134regulation of response to stress10 (10.87%)1200221110
GO:0051234establishment of localization9 (9.78%)1000230111
GO:0051179localization9 (9.78%)1000230111
GO:0043412macromolecule modification9 (9.78%)1011012012
GO:0034654nucleobase-containing compound biosynthetic process9 (9.78%)0011122002
GO:0006810transport9 (9.78%)1000230111
GO:0032774RNA biosynthetic process8 (8.70%)0011122001
GO:0044267cellular protein metabolic process8 (8.70%)1111011011
GO:0006796phosphate-containing compound metabolic process8 (8.70%)2001011012
GO:0006793phosphorus metabolic process8 (8.70%)2001011012
GO:0006260DNA replication7 (7.61%)0101211010
GO:0006464cellular protein modification process7 (7.61%)1011011011
GO:0032502developmental process7 (7.61%)2010200011
GO:0007275multicellular organismal development7 (7.61%)2010200011
GO:0032501multicellular organismal process7 (7.61%)2010200011
GO:0036211protein modification process7 (7.61%)1011011011
GO:2001141regulation of RNA biosynthetic process7 (7.61%)0010122001
GO:0051252regulation of RNA metabolic process7 (7.61%)0010122001
GO:0009889regulation of biosynthetic process7 (7.61%)0010122001
GO:0031326regulation of cellular biosynthetic process7 (7.61%)0010122001
GO:2000112regulation of cellular macromolecule biosynthetic process7 (7.61%)0010122001
GO:0010468regulation of gene expression7 (7.61%)0010122001
GO:0010556regulation of macromolecule biosynthetic process7 (7.61%)0010122001
GO:0006355regulation of transcription, DNA-dependent7 (7.61%)0010122001
GO:0042221response to chemical7 (7.61%)0101121001
GO:0044707single-multicellular organism process7 (7.61%)2010200011
GO:0044767single-organism developmental process7 (7.61%)2010200011
GO:0006351transcription, DNA-templated7 (7.61%)0010122001
GO:0048856anatomical structure development6 (6.52%)2010100011
GO:0048229gametophyte development6 (6.52%)2010100011
GO:0016043cellular component organization5 (5.43%)1010111000
GO:0071840cellular component organization or biogenesis5 (5.43%)1010111000
GO:0016310phosphorylation5 (5.43%)1000011011
GO:0006468protein phosphorylation5 (5.43%)1000011011
GO:0044765single-organism transport5 (5.43%)1000010111
GO:0055085transmembrane transport5 (5.43%)1000010111
GO:0051641cellular localization4 (4.35%)0000220000
GO:0070727cellular macromolecule localization4 (4.35%)0000220000
GO:0034613cellular protein localization4 (4.35%)0000220000
GO:0051276chromosome organization4 (4.35%)1010110000
GO:0051649establishment of localization in cell4 (4.35%)0000220000
GO:0045184establishment of protein localization4 (4.35%)0000220000
GO:0006886intracellular protein transport4 (4.35%)0000220000
GO:0046907intracellular transport4 (4.35%)0000220000
GO:0033036macromolecule localization4 (4.35%)0000220000
GO:0006996organelle organization4 (4.35%)1010110000
GO:0071702organic substance transport4 (4.35%)0000220000
GO:0008104protein localization4 (4.35%)0000220000
GO:0015031protein transport4 (4.35%)0000220000
GO:0046686response to cadmium ion4 (4.35%)0101010001
GO:0010035response to inorganic substance4 (4.35%)0101010001
GO:0010038response to metal ion4 (4.35%)0101010001
GO:1901700response to oxygen-containing compound4 (4.35%)0100111000
GO:0071103DNA conformation change3 (3.26%)1000110000
GO:0007049cell cycle3 (3.26%)0000010011
GO:0022402cell cycle process3 (3.26%)0000010011
GO:0030154cell differentiation3 (3.26%)2010000000
GO:0051301cell division3 (3.26%)0000010011
GO:0048869cellular developmental process3 (3.26%)2010000000
GO:0048610cellular process involved in reproduction3 (3.26%)2010000000
GO:0022412cellular process involved in reproduction in multicellular organism3 (3.26%)2010000000
GO:0003006developmental process involved in reproduction3 (3.26%)2010000000
GO:0009553embryo sac development3 (3.26%)1000000011
GO:0007276gamete generation3 (3.26%)2010000000
GO:0009561megagametogenesis3 (3.26%)1000000011
GO:0000278mitotic cell cycle3 (3.26%)0000010011
GO:0032504multicellular organism reproduction3 (3.26%)2010000000
GO:0048609multicellular organismal reproductive process3 (3.26%)2010000000
GO:1901564organonitrogen compound metabolic process3 (3.26%)1000100001
GO:0055114oxidation-reduction process3 (3.26%)1100000010
GO:0006508proteolysis3 (3.26%)0011001000
GO:0000003reproduction3 (3.26%)2010000000
GO:0022414reproductive process3 (3.26%)2010000000
GO:0010033response to organic substance3 (3.26%)0000111000
GO:0019953sexual reproduction3 (3.26%)2010000000
GO:0044702single organism reproductive process3 (3.26%)2010000000
GO:0006323DNA packaging2 (2.17%)1000010000
GO:0006261DNA-dependent DNA replication2 (2.17%)0001100000
GO:0009451RNA modification2 (2.17%)0000001001
GO:0006396RNA processing2 (2.17%)0000001001
GO:0048646anatomical structure formation involved in morphogenesis2 (2.17%)0000000011
GO:0009653anatomical structure morphogenesis2 (2.17%)0000000011
GO:0007154cell communication2 (2.17%)1000100000
GO:0007349cellularization2 (2.17%)0000000011
GO:0030261chromosome condensation2 (2.17%)1000010000
GO:0051186cofactor metabolic process2 (2.17%)1000100000
GO:0000910cytokinesis2 (2.17%)0000000011
GO:0000911cytokinesis by cell plate formation2 (2.17%)0000000011
GO:0032506cytokinetic process2 (2.17%)0000000011
GO:0009558embryo sac cellularization2 (2.17%)0000000011
GO:0048232male gamete generation2 (2.17%)1010000000
GO:0055046microgametogenesis2 (2.17%)1010000000
GO:0000281mitotic cytokinesis2 (2.17%)0000000011
GO:1902410mitotic cytokinetic process2 (2.17%)0000000011
GO:0055086nucleobase-containing small molecule metabolic process2 (2.17%)1000000001
GO:0006753nucleoside phosphate metabolic process2 (2.17%)1000000001
GO:0009117nucleotide metabolic process2 (2.17%)1000000001
GO:1901566organonitrogen compound biosynthetic process2 (2.17%)0000100001
GO:0019637organophosphate metabolic process2 (2.17%)1000000001
GO:0009555pollen development2 (2.17%)1010000000
GO:0048235pollen sperm cell differentiation2 (2.17%)1010000000
GO:0001522pseudouridine synthesis2 (2.17%)0000001001
GO:0009628response to abiotic stimulus2 (2.17%)1100000000
GO:0009719response to endogenous stimulus2 (2.17%)0000011000
GO:0009739response to gibberellin stimulus2 (2.17%)0000011000
GO:0009725response to hormone2 (2.17%)0000011000
GO:0033993response to lipid2 (2.17%)0000011000
GO:0014070response to organic cyclic compound2 (2.17%)0000011000
GO:0009751response to salicylic acid2 (2.17%)0000011000
GO:0007165signal transduction2 (2.17%)1000100000
GO:0023052signaling2 (2.17%)1000100000
GO:0044700single organism signaling2 (2.17%)1000100000
GO:0044711single-organism biosynthetic process2 (2.17%)0000100001
GO:0044281small molecule metabolic process2 (2.17%)1000000001
GO:0032508DNA duplex unwinding1 (1.09%)0000100000
GO:0032392DNA geometric change1 (1.09%)0000100000
GO:0006310DNA recombination1 (1.09%)0000010000
GO:0006270DNA replication initiation1 (1.09%)0000100000
GO:0006269DNA replication, synthesis of RNA primer1 (1.09%)0001000000
GO:0006268DNA unwinding involved in DNA replication1 (1.09%)0000100000
GO:0006739NADP metabolic process1 (1.09%)1000000000
GO:0006740NADPH regeneration1 (1.09%)1000000000
GO:0009955adaxial/abaxial pattern specification1 (1.09%)0000100000
GO:0016052carbohydrate catabolic process1 (1.09%)1000000000
GO:0009756carbohydrate mediated signaling1 (1.09%)0000100000
GO:0005975carbohydrate metabolic process1 (1.09%)1000000000
GO:0009056catabolic process1 (1.09%)1000000000
GO:0008283cell proliferation1 (1.09%)0000100000
GO:0007166cell surface receptor signaling pathway1 (1.09%)1000000000
GO:0071555cell wall organization1 (1.09%)0000001000
GO:0071554cell wall organization or biogenesis1 (1.09%)0000001000
GO:0071322cellular response to carbohydrate stimulus1 (1.09%)0000100000
GO:0070887cellular response to chemical stimulus1 (1.09%)0000100000
GO:0071310cellular response to organic substance1 (1.09%)0000100000
GO:1901701cellular response to oxygen-containing compound1 (1.09%)0000100000
GO:0015995chlorophyll biosynthetic process1 (1.09%)0000100000
GO:0015994chlorophyll metabolic process1 (1.09%)0000100000
GO:0009658chloroplast organization1 (1.09%)0000100000
GO:0016568chromatin modification1 (1.09%)0010000000
GO:0006325chromatin organization1 (1.09%)0010000000
GO:0006342chromatin silencing1 (1.09%)0010000000
GO:0006348chromatin silencing at telomere1 (1.09%)0010000000
GO:0007059chromosome segregation1 (1.09%)0000010000
GO:0006732coenzyme metabolic process1 (1.09%)1000000000
GO:0051188cofactor biosynthetic process1 (1.09%)0000100000
GO:0016569covalent chromatin modification1 (1.09%)0010000000
GO:0016311dephosphorylation1 (1.09%)0001000000
GO:0006302double-strand break repair1 (1.09%)1000000000
GO:0009560embryo sac egg cell differentiation1 (1.09%)1000000000
GO:0007167enzyme linked receptor protein signaling pathway1 (1.09%)1000000000
GO:0045229external encapsulating structure organization1 (1.09%)0000001000
GO:0007292female gamete generation1 (1.09%)1000000000
GO:0016458gene silencing1 (1.09%)0010000000
GO:0006007glucose catabolic process1 (1.09%)1000000000
GO:0006006glucose metabolic process1 (1.09%)1000000000
GO:0019320hexose catabolic process1 (1.09%)1000000000
GO:0019318hexose metabolic process1 (1.09%)1000000000
GO:0016573histone acetylation1 (1.09%)0010000000
GO:0016570histone modification1 (1.09%)0010000000
GO:0018393internal peptidyl-lysine acetylation1 (1.09%)0010000000
GO:0006475internal protein amino acid acetylation1 (1.09%)0010000000
GO:0048366leaf development1 (1.09%)0000100000
GO:0007067mitosis1 (1.09%)0000010000
GO:0007076mitotic chromosome condensation1 (1.09%)0000010000
GO:0000070mitotic sister chromatid segregation1 (1.09%)0000010000
GO:0046365monosaccharide catabolic process1 (1.09%)1000000000
GO:0005996monosaccharide metabolic process1 (1.09%)1000000000
GO:0051253negative regulation of RNA metabolic process1 (1.09%)0010000000
GO:0048519negative regulation of biological process1 (1.09%)0010000000
GO:0009890negative regulation of biosynthetic process1 (1.09%)0010000000
GO:0031327negative regulation of cellular biosynthetic process1 (1.09%)0010000000
GO:2000113negative regulation of cellular macromolecule biosynthetic process1 (1.09%)0010000000
GO:0031324negative regulation of cellular metabolic process1 (1.09%)0010000000
GO:0048523negative regulation of cellular process1 (1.09%)0010000000
GO:0010629negative regulation of gene expression1 (1.09%)0010000000
GO:0045814negative regulation of gene expression, epigenetic1 (1.09%)0010000000
GO:0010558negative regulation of macromolecule biosynthetic process1 (1.09%)0010000000
GO:0010605negative regulation of macromolecule metabolic process1 (1.09%)0010000000
GO:0009892negative regulation of metabolic process1 (1.09%)0010000000
GO:0051172negative regulation of nitrogen compound metabolic process1 (1.09%)0010000000
GO:0045934negative regulation of nucleobase-containing compound metabolic process1 (1.09%)0010000000
GO:0045892negative regulation of transcription, DNA-dependent1 (1.09%)0010000000
GO:0046496nicotinamide nucleotide metabolic process1 (1.09%)1000000000
GO:0000280nuclear division1 (1.09%)0000010000
GO:1901293nucleoside phosphate biosynthetic process1 (1.09%)0000000001
GO:0009165nucleotide biosynthetic process1 (1.09%)0000000001
GO:0048285organelle fission1 (1.09%)0000010000
GO:1901575organic substance catabolic process1 (1.09%)1000000000
GO:0090407organophosphate biosynthetic process1 (1.09%)0000000001
GO:0006733oxidoreduction coenzyme metabolic process1 (1.09%)1000000000
GO:0007389pattern specification process1 (1.09%)0000100000
GO:0006098pentose-phosphate shunt1 (1.09%)1000000000
GO:0018193peptidyl-amino acid modification1 (1.09%)0010000000
GO:0018394peptidyl-lysine acetylation1 (1.09%)0010000000
GO:0018205peptidyl-lysine modification1 (1.09%)0010000000
GO:0015979photosynthesis1 (1.09%)0000100000
GO:0048827phyllome development1 (1.09%)0000100000
GO:0046148pigment biosynthetic process1 (1.09%)0000100000
GO:0042440pigment metabolic process1 (1.09%)0000100000
GO:0009664plant-type cell wall organization1 (1.09%)0000001000
GO:0071669plant-type cell wall organization or biogenesis1 (1.09%)0000001000
GO:0009657plastid organization1 (1.09%)0000100000
GO:0006779porphyrin-containing compound biosynthetic process1 (1.09%)0000100000
GO:0006778porphyrin-containing compound metabolic process1 (1.09%)0000100000
GO:0006473protein acetylation1 (1.09%)0010000000
GO:0043543protein acylation1 (1.09%)0010000000
GO:0006470protein dephosphorylation1 (1.09%)0001000000
GO:0019362pyridine nucleotide metabolic process1 (1.09%)1000000000
GO:0072524pyridine-containing compound metabolic process1 (1.09%)1000000000
GO:0006221pyrimidine nucleotide biosynthetic process1 (1.09%)0000000001
GO:0006220pyrimidine nucleotide metabolic process1 (1.09%)0000000001
GO:0072528pyrimidine-containing compound biosynthetic process1 (1.09%)0000000001
GO:0072527pyrimidine-containing compound metabolic process1 (1.09%)0000000001
GO:0003002regionalization1 (1.09%)0000100000
GO:0040029regulation of gene expression, epigenetic1 (1.09%)0010000000
GO:0009743response to carbohydrate1 (1.09%)0000100000
GO:0009409response to cold1 (1.09%)0100000000
GO:0010332response to gamma radiation1 (1.09%)1000000000
GO:0010212response to ionizing radiation1 (1.09%)1000000000
GO:0006970response to osmotic stress1 (1.09%)0100000000
GO:0009314response to radiation1 (1.09%)1000000000
GO:0009651response to salt stress1 (1.09%)0100000000
GO:0009266response to temperature stimulus1 (1.09%)0100000000
GO:0009415response to water1 (1.09%)0100000000
GO:0009414response to water deprivation1 (1.09%)0100000000
GO:0048367shoot system development1 (1.09%)0000100000
GO:0044724single-organism carbohydrate catabolic process1 (1.09%)1000000000
GO:0044723single-organism carbohydrate metabolic process1 (1.09%)1000000000
GO:0044712single-organism catabolic process1 (1.09%)1000000000
GO:0000819sister chromatid segregation1 (1.09%)0000010000
GO:0010182sugar mediated signaling pathway1 (1.09%)0000100000
GO:0048731system development1 (1.09%)0000100000
GO:0033014tetrapyrrole biosynthetic process1 (1.09%)0000100000
GO:0033013tetrapyrrole metabolic process1 (1.09%)0000100000
GO:0006412translation1 (1.09%)0100000000
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway1 (1.09%)1000000000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding51 (55.43%)2332989249
GO:1901363heterocyclic compound binding33 (35.87%)2332465026
GO:0097159organic cyclic compound binding33 (35.87%)2332465026
GO:0003824catalytic activity27 (29.35%)1234334025
GO:0003676nucleic acid binding24 (26.09%)1232344005
GO:0005515protein binding22 (23.91%)1000742233
GO:0043167ion binding20 (21.74%)1211343023
GO:0003677DNA binding19 (20.65%)0122343004
GO:0043168anion binding15 (16.30%)1201241022
GO:1901265nucleoside phosphate binding15 (16.30%)1201241022
GO:0000166nucleotide binding15 (16.30%)1201241022
GO:0036094small molecule binding15 (16.30%)1201241022
GO:0005524ATP binding14 (15.22%)1101241022
GO:0030554adenyl nucleotide binding14 (15.22%)1101241022
GO:0032559adenyl ribonucleotide binding14 (15.22%)1101241022
GO:0097367carbohydrate derivative binding14 (15.22%)1101241022
GO:0001882nucleoside binding14 (15.22%)1101241022
GO:0001883purine nucleoside binding14 (15.22%)1101241022
GO:0017076purine nucleotide binding14 (15.22%)1101241022
GO:0032550purine ribonucleoside binding14 (15.22%)1101241022
GO:0035639purine ribonucleoside triphosphate binding14 (15.22%)1101241022
GO:0032555purine ribonucleotide binding14 (15.22%)1101241022
GO:0032549ribonucleoside binding14 (15.22%)1101241022
GO:0032553ribonucleotide binding14 (15.22%)1101241022
GO:0016787hydrolase activity13 (14.13%)0123122002
GO:0016740transferase activity8 (8.70%)1011111011
GO:0005516calmodulin binding7 (7.61%)0000001222
GO:0016772transferase activity, transferring phosphorus-containing groups7 (7.61%)1001111011
GO:0005215transporter activity7 (7.61%)1000220101
GO:0016817hydrolase activity, acting on acid anhydrides6 (6.52%)0101120001
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides6 (6.52%)0101120001
GO:0016301kinase activity6 (6.52%)1000111011
GO:0017111nucleoside-triphosphatase activity6 (6.52%)0101120001
GO:0016773phosphotransferase activity, alcohol group as acceptor6 (6.52%)1000111011
GO:0004672protein kinase activity6 (6.52%)1000111011
GO:0016462pyrophosphatase activity6 (6.52%)0101120001
GO:0043169cation binding5 (5.43%)0010102001
GO:0019899enzyme binding5 (5.43%)0000320000
GO:0004386helicase activity5 (5.43%)0001120001
GO:0046872metal ion binding5 (5.43%)0010102001
GO:0004674protein serine/threonine kinase activity5 (5.43%)1000101011
GO:0051020GTPase binding4 (4.35%)0000220000
GO:0003723RNA binding4 (4.35%)0110001001
GO:0008536Ran GTPase binding4 (4.35%)0000220000
GO:0017016Ras GTPase binding4 (4.35%)0000220000
GO:0022804active transmembrane transporter activity4 (4.35%)1000010101
GO:0003682chromatin binding4 (4.35%)0010011001
GO:0005315inorganic phosphate transmembrane transporter activity4 (4.35%)1000010101
GO:1901677phosphate transmembrane transporter activity4 (4.35%)1000010101
GO:0015291secondary active transmembrane transporter activity4 (4.35%)1000010101
GO:0031267small GTPase binding4 (4.35%)0000220000
GO:0022892substrate-specific transporter activity4 (4.35%)1000210000
GO:0046914transition metal ion binding4 (4.35%)0000102001
GO:0022857transmembrane transporter activity4 (4.35%)1000010101
GO:0008270zinc ion binding4 (4.35%)0000102001
GO:0004175endopeptidase activity3 (3.26%)0011001000
GO:0008233peptidase activity3 (3.26%)0011001000
GO:0070011peptidase activity, acting on L-amino acid peptides3 (3.26%)0011001000
GO:0008565protein transporter activity3 (3.26%)0000210000
GO:0017171serine hydrolase activity3 (3.26%)0011001000
GO:0004252serine-type endopeptidase activity3 (3.26%)0011001000
GO:0008236serine-type peptidase activity3 (3.26%)0011001000
GO:0003678DNA helicase activity2 (2.17%)0000110000
GO:0016788hydrolase activity, acting on ester bonds2 (2.17%)0011000000
GO:0016866intramolecular transferase activity2 (2.17%)0000001001
GO:0016853isomerase activity2 (2.17%)0000001001
GO:0016874ligase activity2 (2.17%)0000100001
GO:0001071nucleic acid binding transcription factor activity2 (2.17%)0001100000
GO:0016491oxidoreductase activity2 (2.17%)0100000010
GO:0009982pseudouridine synthase activity2 (2.17%)0000001001
GO:0003700sequence-specific DNA binding transcription factor activity2 (2.17%)0001100000
GO:0016887ATPase activity1 (1.09%)0000010000
GO:0042623ATPase activity, coupled1 (1.09%)0000010000
GO:0003883CTP synthase activity1 (1.09%)0000000001
GO:0003689DNA clamp loader activity1 (1.09%)0000010000
GO:0070182DNA polymerase binding1 (1.09%)0000100000
GO:0003896DNA primase activity1 (1.09%)0001000000
GO:0008094DNA-dependent ATPase activity1 (1.09%)0000010000
GO:0003899DNA-directed RNA polymerase activity1 (1.09%)0001000000
GO:0010485H4 histone acetyltransferase activity1 (1.09%)0010000000
GO:0008080N-acetyltransferase activity1 (1.09%)0010000000
GO:0016410N-acyltransferase activity1 (1.09%)0010000000
GO:0050661NADP binding1 (1.09%)0100000000
GO:0070401NADP+ binding1 (1.09%)0100000000
GO:0034062RNA polymerase activity1 (1.09%)0001000000
GO:0016407acetyltransferase activity1 (1.09%)0010000000
GO:0008106alcohol dehydrogenase (NADP+) activity1 (1.09%)0100000000
GO:0004033aldo-keto reductase (NADP) activity1 (1.09%)0100000000
GO:0008509anion transmembrane transporter activity1 (1.09%)1000000000
GO:0016830carbon-carbon lyase activity1 (1.09%)0000100000
GO:0050662coenzyme binding1 (1.09%)0100000000
GO:0048037cofactor binding1 (1.09%)0100000000
GO:0097472cyclin-dependent protein kinase activity1 (1.09%)0000100000
GO:0004693cyclin-dependent protein serine/threonine kinase activity1 (1.09%)0000100000
GO:0009378four-way junction helicase activity1 (1.09%)0000010000
GO:0031072heat shock protein binding1 (1.09%)0000100000
GO:0004402histone acetyltransferase activity1 (1.09%)0010000000
GO:0015075ion transmembrane transporter activity1 (1.09%)1000000000
GO:0019900kinase binding1 (1.09%)0000100000
GO:0016879ligase activity, forming carbon-nitrogen bonds1 (1.09%)0000000001
GO:0051002ligase activity, forming nitrogen-metal bonds1 (1.09%)0000100000
GO:0051003ligase activity, forming nitrogen-metal bonds, forming coordination complexes1 (1.09%)0000100000
GO:0016829lyase activity1 (1.09%)0000100000
GO:0016851magnesium chelatase activity1 (1.09%)0000100000
GO:0016779nucleotidyltransferase activity1 (1.09%)0001000000
GO:0008514organic anion transmembrane transporter activity1 (1.09%)1000000000
GO:0016725oxidoreductase activity, acting on CH or CH2 groups1 (1.09%)0000000010
GO:0016728oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor1 (1.09%)0000000010
GO:0016614oxidoreductase activity, acting on CH-OH group of donors1 (1.09%)0100000000
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1 (1.09%)0100000000
GO:0016833oxo-acid-lyase activity1 (1.09%)0000100000
GO:0016791phosphatase activity1 (1.09%)0001000000
GO:0004721phosphoprotein phosphatase activity1 (1.09%)0001000000
GO:0042578phosphoric ester hydrolase activity1 (1.09%)0001000000
GO:0000988protein binding transcription factor activity1 (1.09%)0000100000
GO:0019901protein kinase binding1 (1.09%)0000100000
GO:0004722protein serine/threonine phosphatase activity1 (1.09%)0001000000
GO:0033170protein-DNA loading ATPase activity1 (1.09%)0000010000
GO:0004748ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor1 (1.09%)0000000010
GO:0043565sequence-specific DNA binding1 (1.09%)0000100000
GO:0016229steroid dehydrogenase activity1 (1.09%)0100000000
GO:0003735structural constituent of ribosome1 (1.09%)0100000000
GO:0005198structural molecule activity1 (1.09%)0100000000
GO:0022891substrate-specific transmembrane transporter activity1 (1.09%)1000000000
GO:0003713transcription coactivator activity1 (1.09%)0000100000
GO:0003712transcription cofactor activity1 (1.09%)0000100000
GO:0000989transcription factor binding transcription factor activity1 (1.09%)0000100000
GO:0016746transferase activity, transferring acyl groups1 (1.09%)0010000000
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups1 (1.09%)0010000000

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell39 (42.39%)6520684134
GO:0044464cell part39 (42.39%)6520684134
GO:0005622intracellular33 (35.87%)5520483132
GO:0044424intracellular part33 (35.87%)5520483132
GO:0043229intracellular organelle30 (32.61%)5520483111
GO:0043226organelle30 (32.61%)5520483111
GO:0043231intracellular membrane-bounded organelle29 (31.52%)5520473111
GO:0043227membrane-bounded organelle29 (31.52%)5520473111
GO:0005634nucleus22 (23.91%)4410443110
GO:0044446intracellular organelle part20 (21.74%)2400272111
GO:0044422organelle part20 (21.74%)2400272111
GO:0043232intracellular non-membrane-bounded organelle15 (16.30%)1400242110
GO:0016020membrane15 (16.30%)2111212113
GO:0043228non-membrane-bounded organelle15 (16.30%)1400242110
GO:0005737cytoplasm14 (15.22%)1220230022
GO:0005694chromosome13 (14.13%)1200242110
GO:0044444cytoplasmic part13 (14.13%)1220130022
GO:0070013intracellular organelle lumen12 (13.04%)1300231110
GO:0031974membrane-enclosed lumen12 (13.04%)1300231110
GO:0031981nuclear lumen12 (13.04%)1300231110
GO:0044428nuclear part12 (13.04%)1300231110
GO:0005730nucleolus12 (13.04%)1300231110
GO:0043233organelle lumen12 (13.04%)1300231110
GO:0000793condensed chromosome11 (11.96%)1200231110
GO:0009507chloroplast9 (9.78%)1210130001
GO:0016021integral to membrane9 (9.78%)2011011111
GO:0031224intrinsic to membrane9 (9.78%)2011011111
GO:0044425membrane part9 (9.78%)2011011111
GO:0009536plastid9 (9.78%)1210130001
GO:0071944cell periphery6 (6.52%)1000201002
GO:0032991macromolecular complex6 (6.52%)0100121010
GO:0005886plasma membrane6 (6.52%)1000201002
GO:0044435plastid part6 (6.52%)1100030001
GO:0009941chloroplast envelope5 (5.43%)1000030001
GO:0044434chloroplast part5 (5.43%)1000030001
GO:0031975envelope5 (5.43%)1000030001
GO:0031967organelle envelope5 (5.43%)1000030001
GO:0009526plastid envelope5 (5.43%)1000030001
GO:0043234protein complex5 (5.43%)0000121010
GO:0009706chloroplast inner membrane3 (3.26%)1000010001
GO:0031969chloroplast membrane3 (3.26%)1000010001
GO:0044427chromosomal part3 (3.26%)0000021000
GO:0019866organelle inner membrane3 (3.26%)1000010001
GO:0031090organelle membrane3 (3.26%)1000010001
GO:0009528plastid inner membrane3 (3.26%)1000010001
GO:0042170plastid membrane3 (3.26%)1000010001
GO:0005829cytosol2 (2.17%)0110000000
GO:0009524phragmoplast2 (2.17%)0000000011
GO:0044815DNA packaging complex1 (1.09%)0000010000
GO:0005663DNA replication factor C complex1 (1.09%)0000010000
GO:0042555MCM complex1 (1.09%)0000100000
GO:1902494catalytic complex1 (1.09%)0000000010
GO:0030054cell junction1 (1.09%)0001000000
GO:0005911cell-cell junction1 (1.09%)0001000000
GO:0000796condensin complex1 (1.09%)0000010000
GO:0005576extracellular region1 (1.09%)0000001000
GO:0000313organellar ribosome1 (1.09%)0100000000
GO:0000314organellar small ribosomal subunit1 (1.09%)0100000000
GO:0000808origin recognition complex1 (1.09%)0000001000
GO:1990204oxidoreductase complex1 (1.09%)0000000010
GO:0009506plasmodesma1 (1.09%)0001000000
GO:0009547plastid ribosome1 (1.09%)0100000000
GO:0000312plastid small ribosomal subunit1 (1.09%)0100000000
GO:0009532plastid stroma1 (1.09%)0100000000
GO:0032993protein-DNA complex1 (1.09%)0000010000
GO:0005657replication fork1 (1.09%)0000010000
GO:0030529ribonucleoprotein complex1 (1.09%)0100000000
GO:0005971ribonucleoside-diphosphate reductase complex1 (1.09%)0000000010
GO:0044391ribosomal subunit1 (1.09%)0100000000
GO:0005840ribosome1 (1.09%)0100000000
GO:0015935small ribosomal subunit1 (1.09%)0100000000
GO:0055044symplast1 (1.09%)0001000000
GO:0009579thylakoid1 (1.09%)0100000000