PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_61
Name: PALBOXLPC
Description: Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation

#Associated genes: 413
#Associated MapMan terms: 185

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
16	secondary metabolism	65 (15.74%)	4	7	10	11	17	6	2	8
27	RNA	51 (12.35%)	2	0	8	14	8	7	4	8
27.3	RNA.regulation of transcription	51 (12.35%)	2	0	8	14	8	7	4	8
16.2	secondary metabolism.phenylpropanoids	49 (11.86%)	3	6	9	7	12	5	2	5
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	45 (10.90%)	3	6	7	7	10	5	2	5
13	amino acid metabolism	38 (9.20%)	1	5	6	5	8	4	4	5
13.1	amino acid metabolism.synthesis	34 (8.23%)	1	4	5	5	8	3	3	5
16.2.1.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	27 (6.54%)	2	6	5	4	4	1	1	4
13.1.6	amino acid metabolism.synthesis.aromatic aa	24 (5.81%)	0	4	3	3	3	3	3	5
13.1.6.1	amino acid metabolism.synthesis.aromatic aa.chorismate	21 (5.08%)	0	4	2	2	3	3	2	5
29	protein	21 (5.08%)	1	2	2	6	3	4	0	3
26	misc	20 (4.84%)	0	2	7	1	2	2	3	3
30	signalling	14 (3.39%)	0	0	1	9	1	1	0	2
29.4	protein.postranslational modification	13 (3.15%)	0	0	2	5	2	2	0	2
34	transport	13 (3.15%)	0	1	3	2	1	2	1	3
16.2.1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	12 (2.91%)	0	0	1	2	4	3	1	1
20	stress	12 (2.91%)	0	0	1	4	3	2	1	1
21	redox	12 (2.91%)	0	2	1	3	2	2	1	1
26.10	misc.cytochrome P450	9 (2.18%)	0	2	3	0	1	1	2	0
33	development	9 (2.18%)	0	0	0	2	0	4	2	1
33.99	development.unspecified	9 (2.18%)	0	0	0	2	0	4	2	1
16.8	secondary metabolism.flavonoids	8 (1.94%)	0	0	0	2	4	0	0	2
21.2	redox.ascorbate and glutathione	8 (1.94%)	0	2	0	2	2	1	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	8 (1.94%)	0	0	3	2	3	0	0	0
30.2	signalling.receptor kinases	8 (1.94%)	0	0	1	4	1	1	0	1
4	glycolysis	7 (1.69%)	0	1	1	3	1	0	0	1
13.1.6.1.1	amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	7 (1.69%)	0	1	0	0	2	2	0	2
20.1	stress.biotic	7 (1.69%)	0	0	1	4	1	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	7 (1.69%)	1	0	0	4	2	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (1.69%)	0	0	1	4	1	1	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	6 (1.45%)	0	0	0	2	3	0	0	1
16.8.3.1	secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase	6 (1.45%)	0	0	0	2	3	0	0	1
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	6 (1.45%)	0	0	2	0	0	1	1	2
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	6 (1.45%)	0	0	3	1	2	0	0	0
3	minor CHO metabolism	5 (1.21%)	0	0	0	0	2	1	1	1
11	lipid metabolism	5 (1.21%)	1	0	1	0	2	0	0	1
13.1.6.1.6	amino acid metabolism.synthesis.aromatic aa.chorismate.5-enolpyruvylshikimate-3-phosphate synthase	5 (1.21%)	0	1	0	1	1	1	0	1
16.2.1.6	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT	5 (1.21%)	0	0	1	1	2	1	0	0
20.1.1	stress.biotic.respiratory burst	5 (1.21%)	0	0	1	2	1	1	0	0
20.2	stress.abiotic	5 (1.21%)	0	0	0	0	2	1	1	1
26.12	misc.peroxidases	5 (1.21%)	0	0	2	0	0	1	0	2
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	5 (1.21%)	0	0	1	1	0	1	0	2
29.5	protein.degradation	5 (1.21%)	0	2	0	0	0	2	0	1
30.6	signalling.MAP kinases	5 (1.21%)	0	0	0	4	0	0	0	1
31	cell	5 (1.21%)	0	1	3	1	0	0	0	0
1	PS	4 (0.97%)	0	0	0	1	2	0	1	0
13.1.3	amino acid metabolism.synthesis.aspartate family	4 (0.97%)	0	0	1	1	2	0	0	0
13.1.3.4	amino acid metabolism.synthesis.aspartate family.methionine	4 (0.97%)	0	0	1	1	2	0	0	0
3.1	minor CHO metabolism.raffinose family	4 (0.97%)	0	0	0	0	2	1	1	0
4.1	glycolysis.cytosolic branch	4 (0.97%)	0	1	1	1	0	0	0	1
13.2	amino acid metabolism.degradation	4 (0.97%)	0	1	1	0	0	1	1	0
16.4	secondary metabolism.N misc	4 (0.97%)	0	0	1	2	0	0	0	1
16.4.1	secondary metabolism.N misc.alkaloid-like	4 (0.97%)	0	0	1	2	0	0	0	1
20.2.1	stress.abiotic.heat	4 (0.97%)	0	0	0	0	1	1	1	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (0.97%)	1	0	0	0	2	1	0	0
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	4 (0.97%)	0	0	0	0	2	1	1	0
3.1.2.2	minor CHO metabolism.raffinose family.raffinose synthases.putative	4 (0.97%)	0	0	0	0	2	1	1	0
17	hormone metabolism	4 (0.97%)	0	0	2	0	1	0	1	0
25	C1-metabolism	4 (0.97%)	0	1	0	0	2	1	0	0
31.1	cell.organisation	4 (0.97%)	0	1	3	0	0	0	0	0
34.7	transport.phosphate	4 (0.97%)	0	0	1	1	0	1	0	1
1.2	PS.photorespiration	3 (0.73%)	0	0	0	1	2	0	0	0
4.3	glycolysis.unclear/dually targeted	3 (0.73%)	0	0	0	2	1	0	0	0
7	OPP	3 (0.73%)	0	0	1	1	0	0	0	1
11.9	lipid metabolism.lipid degradation	3 (0.73%)	1	0	0	0	1	0	0	1
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	3 (0.73%)	1	0	0	0	2	0	0	0
13.1.1.2	amino acid metabolism.synthesis.central amino acid metabolism.aspartate	3 (0.73%)	1	0	0	0	2	0	0	0
13.1.1.2.1	amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	3 (0.73%)	1	0	0	0	2	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	3 (0.73%)	0	0	1	1	1	0	0	0
13.1.5.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine	3 (0.73%)	0	0	1	1	1	0	0	0
13.1.5.1.2	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase	3 (0.73%)	0	0	1	1	1	0	0	0
13.1.6.1.10	amino acid metabolism.synthesis.aromatic aa.chorismate.dehydroquinate/shikimate dehydrogenase	3 (0.73%)	0	1	1	1	0	0	0	0
13.1.6.1.2	amino acid metabolism.synthesis.aromatic aa.chorismate.3-dehydroquinate synthase	3 (0.73%)	0	1	0	1	0	0	0	1
13.1.6.1.5	amino acid metabolism.synthesis.aromatic aa.chorismate.shikimate kinase	3 (0.73%)	0	1	1	0	0	0	1	0
13.1.6.1.7	amino acid metabolism.synthesis.aromatic aa.chorismate.chorismate synthase	3 (0.73%)	0	0	1	0	0	0	1	1
13.1.6.3	amino acid metabolism.synthesis.aromatic aa.phenylalanine	3 (0.73%)	0	0	1	1	0	0	1	0
13.1.6.3.1	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	3 (0.73%)	0	0	1	1	0	0	1	0
13.2.6	amino acid metabolism.degradation.aromatic aa	3 (0.73%)	0	0	1	0	0	1	1	0
13.2.6.2	amino acid metabolism.degradation.aromatic aa.tyrosine	3 (0.73%)	0	0	1	0	0	1	1	0
16.10	secondary metabolism.simple phenols	3 (0.73%)	0	1	0	0	1	1	0	0
21.1	redox.thioredoxin	3 (0.73%)	0	0	0	1	0	1	0	1
25.6	C1-metabolism.methylenetetrahydrofolate reductase	3 (0.73%)	0	1	0	0	1	1	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	3 (0.73%)	0	0	1	1	0	0	0	1
27.3.12	RNA.regulation of transcription.C3H zinc finger family	3 (0.73%)	0	0	0	0	1	0	1	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.73%)	0	0	1	2	0	0	0	0
29.5.11	protein.degradation.ubiquitin	3 (0.73%)	0	2	0	0	0	0	0	1
30.2.3	signalling.receptor kinases.leucine rich repeat III	3 (0.73%)	0	0	0	2	0	0	0	1
4.3.12	glycolysis.unclear/dually targeted.phosphoglycerate mutase	3 (0.73%)	0	0	0	2	1	0	0	0
1.2.4	PS.photorespiration.glycine cleavage	2 (0.48%)	0	0	0	1	1	0	0	0
1.2.4.4	PS.photorespiration.glycine cleavage.H protein	2 (0.48%)	0	0	0	1	1	0	0	0
10.2	cell wall.cellulose synthesis	2 (0.48%)	0	0	0	0	2	0	0	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	2 (0.48%)	0	0	0	0	2	0	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	2 (0.48%)	0	0	0	0	1	0	0	1
16.8.2	secondary metabolism.flavonoids.chalcones	2 (0.48%)	0	0	0	0	1	0	0	1
17.5	hormone metabolism.ethylene	2 (0.48%)	0	0	1	0	0	0	1	0
17.5.2	hormone metabolism.ethylene.signal transduction	2 (0.48%)	0	0	1	0	0	0	1	0
18.4	Co-factor and vitamine metabolism.pantothenate	2 (0.48%)	0	0	0	2	0	0	0	0
18.4.5	Co-factor and vitamine metabolism.pantothenate.pantothenate kinase (PANK)	2 (0.48%)	0	0	0	2	0	0	0	0
23.3	nucleotide metabolism.salvage	2 (0.48%)	1	0	1	0	0	0	0	0
23.3.2	nucleotide metabolism.salvage.nucleoside kinases	2 (0.48%)	1	0	1	0	0	0	0	0
23.3.2.1	nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase	2 (0.48%)	1	0	1	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.48%)	0	0	0	1	0	0	1	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	2 (0.48%)	0	0	0	0	0	1	0	1
27.3.80	RNA.regulation of transcription.zf-HD	2 (0.48%)	0	0	1	1	0	0	0	0
29.3	protein.targeting	2 (0.48%)	1	0	0	1	0	0	0	0
29.3.4	protein.targeting.secretory pathway	2 (0.48%)	1	0	0	1	0	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	2 (0.48%)	1	0	0	1	0	0	0	0
29.4.1	protein.postranslational modification.kinase	2 (0.48%)	0	0	0	1	0	0	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	2 (0.48%)	0	0	0	1	0	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.48%)	0	0	0	2	0	0	0	0
3.1.2.1	minor CHO metabolism.raffinose family.raffinose synthases.known	2 (0.48%)	0	0	0	0	1	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.48%)	0	0	1	0	1	0	0	0
34.2	transport.sugars	2 (0.48%)	0	0	0	0	0	1	0	1
34.2.1	transport.sugars.sucrose	2 (0.48%)	0	0	0	0	0	1	0	1
34.8	transport.metabolite transporters at the envelope membrane	2 (0.48%)	0	1	1	0	0	0	0	0
4.1.14	glycolysis.cytosolic branch.pyruvate kinase (PK)	2 (0.48%)	0	0	1	0	0	0	0	1
4.2	glycolysis.plastid branch	2 (0.48%)	0	0	1	0	0	0	0	1
4.2.14	glycolysis.plastid branch.pyruvate kinase (PK)	2 (0.48%)	0	0	1	0	0	0	0	1
7.2	OPP.non-reductive PP	2 (0.48%)	0	0	1	0	0	0	0	1
7.2.2	OPP.non-reductive PP.transaldolase	2 (0.48%)	0	0	1	0	0	0	0	1
8	TCA / org transformation	2 (0.48%)	0	0	0	0	0	0	0	2
10	cell wall	2 (0.48%)	0	0	0	0	2	0	0	0
18	Co-factor and vitamine metabolism	2 (0.48%)	0	0	0	2	0	0	0	0
23	nucleotide metabolism	2 (0.48%)	1	0	1	0	0	0	0	0
1.1	PS.lightreaction	1 (0.24%)	0	0	0	0	0	0	1	0
1.1.5	PS.lightreaction.other electron carrier (ox/red)	1 (0.24%)	0	0	0	0	0	0	1	0
1.1.5.2	PS.lightreaction.other electron carrier (ox/red).ferredoxin	1 (0.24%)	0	0	0	0	0	0	1	0
1.2.5	PS.photorespiration.serine hydroxymethyltransferase	1 (0.24%)	0	0	0	0	1	0	0	0
2	major CHO metabolism	1 (0.24%)	0	0	0	1	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.24%)	0	0	0	0	0	0	0	1
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.24%)	0	0	1	0	0	0	0	0
11.1.30	lipid metabolism.FA synthesis and FA elongation.pyruvate kinase	1 (0.24%)	0	0	1	0	0	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	1 (0.24%)	0	0	0	0	1	0	0	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	1 (0.24%)	0	0	0	0	0	0	0	1
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.24%)	1	0	0	0	0	0	0	0
11.9.4.5	lipid metabolism.lipid degradation.beta-oxidation.acyl-CoA thioesterase	1 (0.24%)	1	0	0	0	0	0	0	0
13.2.5	amino acid metabolism.degradation.serine-glycine-cysteine group	1 (0.24%)	0	1	0	0	0	0	0	0
13.2.5.2	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	1 (0.24%)	0	1	0	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.24%)	1	0	0	0	0	0	0	0
16.2.1.5	secondary metabolism.phenylpropanoids.lignin biosynthesis.C3H	1 (0.24%)	1	0	0	0	0	0	0	0
17.2	hormone metabolism.auxin	1 (0.24%)	0	0	1	0	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.24%)	0	0	1	0	0	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.24%)	0	0	0	0	1	0	0	0
17.6.3	hormone metabolism.gibberelin.induced-regulated-responsive-activated	1 (0.24%)	0	0	0	0	1	0	0	0
2.2	major CHO metabolism.degradation	1 (0.24%)	0	0	0	1	0	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.24%)	0	0	0	1	0	0	0	0
2.2.1.5	major CHO metabolism.degradation.sucrose.Susy	1 (0.24%)	0	0	0	1	0	0	0	0
20.2.2	stress.abiotic.cold	1 (0.24%)	0	0	0	0	1	0	0	0
21.5	redox.peroxiredoxin	1 (0.24%)	0	0	1	0	0	0	0	0
21.5.1	redox.peroxiredoxin.BAS1	1 (0.24%)	0	0	1	0	0	0	0	0
24	Biodegradation of Xenobiotics	1 (0.24%)	0	0	0	1	0	0	0	0
24.1	Biodegradation of Xenobiotics.hydroxyacylglutathione hydrolase	1 (0.24%)	0	0	0	1	0	0	0	0
25.1	C1-metabolism.glycine hydroxymethyltransferase	1 (0.24%)	0	0	0	0	1	0	0	0
26.11	misc.alcohol dehydrogenases	1 (0.24%)	0	0	1	0	0	0	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.24%)	0	0	0	0	1	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.24%)	0	0	0	0	0	0	1	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (0.24%)	0	0	0	0	0	0	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.24%)	0	0	0	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.24%)	0	0	0	1	0	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.24%)	0	0	0	0	0	1	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.24%)	0	0	0	0	1	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.24%)	0	0	0	1	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.24%)	0	0	0	0	0	0	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.24%)	0	0	0	1	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.24%)	0	0	0	0	0	1	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.24%)	0	0	0	1	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.24%)	0	0	0	0	0	1	0	0
3.6	minor CHO metabolism.callose	1 (0.24%)	0	0	0	0	0	0	0	1
4.1.13	glycolysis.cytosolic branch.enolase	1 (0.24%)	0	0	0	1	0	0	0	0
4.1.4	glycolysis.cytosolic branch.phosphofructokinase (PFK)	1 (0.24%)	0	1	0	0	0	0	0	0
7.1	OPP.oxidative PP	1 (0.24%)	0	0	0	1	0	0	0	0
7.1.3	OPP.oxidative PP.6-phosphogluconate dehydrogenase	1 (0.24%)	0	0	0	1	0	0	0	0
8.1	TCA / org transformation.TCA	1 (0.24%)	0	0	0	0	0	0	0	1
8.2	TCA / org transformation.other organic acid transformations	1 (0.24%)	0	0	0	0	0	0	0	1
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	1 (0.24%)	0	0	0	0	0	0	0	1
28	DNA	1 (0.24%)	0	0	0	0	0	0	0	1
28.1	DNA.synthesis/chromatin structure	1 (0.24%)	0	0	0	0	0	0	0	1
29.6	protein.folding	1 (0.24%)	0	0	0	0	1	0	0	0
30.11	signalling.light	1 (0.24%)	0	0	0	1	0	0	0	0
31.4	cell.vesicle transport	1 (0.24%)	0	0	0	1	0	0	0	0
34.21	transport.calcium	1 (0.24%)	0	0	0	0	0	0	0	1
34.99	transport.misc	1 (0.24%)	0	0	0	1	0	0	0	0
8.1.1	TCA / org transformation.TCA.pyruvate DH	1 (0.24%)	0	0	0	0	0	0	0	1
8.1.1.1	TCA / org transformation.TCA.pyruvate DH.E1	1 (0.24%)	0	0	0	0	0	0	0	1
8.2.11	TCA / org transformation.other organic acid transformatons.atp-citrate lyase	1 (0.24%)	0	0	0	0	0	0	0	1