PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_607
Name: DREB2A;DREB1A
Description: Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses

#Associated genes: 7
#Associated GO terms: 209

Biological Process
Molecular Function
Cellular Component

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Biological Process (back to top)

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GO	Description	#Associated genes	egr	gma	ppe
GO:0065007	biological regulation	7 (100.00%)	1	4	2
GO:0044260	cellular macromolecule metabolic process	7 (100.00%)	1	4	2
GO:0044237	cellular metabolic process	7 (100.00%)	1	4	2
GO:0009987	cellular process	7 (100.00%)	1	4	2
GO:0043170	macromolecule metabolic process	7 (100.00%)	1	4	2
GO:0008152	metabolic process	7 (100.00%)	1	4	2
GO:0071704	organic substance metabolic process	7 (100.00%)	1	4	2
GO:0044238	primary metabolic process	7 (100.00%)	1	4	2
GO:0050789	regulation of biological process	7 (100.00%)	1	4	2
GO:0050794	regulation of cellular process	7 (100.00%)	1	4	2
GO:0009058	biosynthetic process	5 (71.43%)	1	2	2
GO:0044249	cellular biosynthetic process	5 (71.43%)	1	2	2
GO:0034645	cellular macromolecule biosynthetic process	5 (71.43%)	1	2	2
GO:0009059	macromolecule biosynthetic process	5 (71.43%)	1	2	2
GO:1901576	organic substance biosynthetic process	5 (71.43%)	1	2	2
GO:0044699	single-organism process	5 (71.43%)	1	2	2
GO:0032774	RNA biosynthetic process	4 (57.14%)	1	2	1
GO:0016070	RNA metabolic process	4 (57.14%)	1	2	1
GO:0019438	aromatic compound biosynthetic process	4 (57.14%)	1	2	1
GO:0006725	cellular aromatic compound metabolic process	4 (57.14%)	1	2	1
GO:0044271	cellular nitrogen compound biosynthetic process	4 (57.14%)	1	2	1
GO:0034641	cellular nitrogen compound metabolic process	4 (57.14%)	1	2	1
GO:0010467	gene expression	4 (57.14%)	1	2	1
GO:0018130	heterocycle biosynthetic process	4 (57.14%)	1	2	1
GO:0046483	heterocycle metabolic process	4 (57.14%)	1	2	1
GO:0006807	nitrogen compound metabolic process	4 (57.14%)	1	2	1
GO:0090304	nucleic acid metabolic process	4 (57.14%)	1	2	1
GO:0034654	nucleobase-containing compound biosynthetic process	4 (57.14%)	1	2	1
GO:0006139	nucleobase-containing compound metabolic process	4 (57.14%)	1	2	1
GO:1901362	organic cyclic compound biosynthetic process	4 (57.14%)	1	2	1
GO:1901360	organic cyclic compound metabolic process	4 (57.14%)	1	2	1
GO:2001141	regulation of RNA biosynthetic process	4 (57.14%)	1	2	1
GO:0051252	regulation of RNA metabolic process	4 (57.14%)	1	2	1
GO:0009889	regulation of biosynthetic process	4 (57.14%)	1	2	1
GO:0031326	regulation of cellular biosynthetic process	4 (57.14%)	1	2	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	4 (57.14%)	1	2	1
GO:0031323	regulation of cellular metabolic process	4 (57.14%)	1	2	1
GO:0010468	regulation of gene expression	4 (57.14%)	1	2	1
GO:0010556	regulation of macromolecule biosynthetic process	4 (57.14%)	1	2	1
GO:0060255	regulation of macromolecule metabolic process	4 (57.14%)	1	2	1
GO:0019222	regulation of metabolic process	4 (57.14%)	1	2	1
GO:0051171	regulation of nitrogen compound metabolic process	4 (57.14%)	1	2	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	4 (57.14%)	1	2	1
GO:0080090	regulation of primary metabolic process	4 (57.14%)	1	2	1
GO:0006355	regulation of transcription, DNA-dependent	4 (57.14%)	1	2	1
GO:0006351	transcription, DNA-templated	4 (57.14%)	1	2	1
GO:0007154	cell communication	3 (42.86%)	0	2	1
GO:0070887	cellular response to chemical stimulus	3 (42.86%)	0	2	1
GO:0071407	cellular response to organic cyclic compound	3 (42.86%)	0	2	1
GO:0071310	cellular response to organic substance	3 (42.86%)	0	2	1
GO:1901701	cellular response to oxygen-containing compound	3 (42.86%)	0	2	1
GO:0051716	cellular response to stimulus	3 (42.86%)	0	2	1
GO:0042221	response to chemical	3 (42.86%)	0	2	1
GO:0014070	response to organic cyclic compound	3 (42.86%)	0	2	1
GO:0010033	response to organic substance	3 (42.86%)	0	2	1
GO:1901700	response to oxygen-containing compound	3 (42.86%)	0	2	1
GO:0050896	response to stimulus	3 (42.86%)	0	2	1
GO:0007165	signal transduction	3 (42.86%)	0	2	1
GO:0023052	signaling	3 (42.86%)	0	2	1
GO:0044700	single organism signaling	3 (42.86%)	0	2	1
GO:0044763	single-organism cellular process	3 (42.86%)	0	2	1
GO:0009742	brassinosteroid mediated signaling pathway	2 (28.57%)	0	2	0
GO:0044267	cellular protein metabolic process	2 (28.57%)	0	2	0
GO:0006464	cellular protein modification process	2 (28.57%)	0	2	0
GO:0097306	cellular response to alcohol	2 (28.57%)	0	2	0
GO:0071367	cellular response to brassinosteroid stimulus	2 (28.57%)	0	2	0
GO:0071495	cellular response to endogenous stimulus	2 (28.57%)	0	2	0
GO:0032870	cellular response to hormone stimulus	2 (28.57%)	0	2	0
GO:0071396	cellular response to lipid	2 (28.57%)	0	2	0
GO:0071383	cellular response to steroid hormone stimulus	2 (28.57%)	0	2	0
GO:0009567	double fertilization forming a zygote and endosperm	2 (28.57%)	1	0	1
GO:0009566	fertilization	2 (28.57%)	1	0	1
GO:0009755	hormone-mediated signaling pathway	2 (28.57%)	0	2	0
GO:0043412	macromolecule modification	2 (28.57%)	0	2	0
GO:0006796	phosphate-containing compound metabolic process	2 (28.57%)	0	2	0
GO:0006793	phosphorus metabolic process	2 (28.57%)	0	2	0
GO:0016310	phosphorylation	2 (28.57%)	0	2	0
GO:0019538	protein metabolic process	2 (28.57%)	0	2	0
GO:0036211	protein modification process	2 (28.57%)	0	2	0
GO:0006468	protein phosphorylation	2 (28.57%)	0	2	0
GO:0000003	reproduction	2 (28.57%)	1	0	1
GO:0022414	reproductive process	2 (28.57%)	1	0	1
GO:0097305	response to alcohol	2 (28.57%)	0	2	0
GO:0009741	response to brassinosteroid	2 (28.57%)	0	2	0
GO:0009719	response to endogenous stimulus	2 (28.57%)	0	2	0
GO:0009725	response to hormone	2 (28.57%)	0	2	0
GO:0033993	response to lipid	2 (28.57%)	0	2	0
GO:0048545	response to steroid hormone	2 (28.57%)	0	2	0
GO:0019953	sexual reproduction	2 (28.57%)	1	0	1
GO:0044702	single organism reproductive process	2 (28.57%)	1	0	1
GO:0043401	steroid hormone mediated signaling pathway	2 (28.57%)	0	2	0
GO:0048856	anatomical structure development	1 (14.29%)	0	0	1
GO:0009653	anatomical structure morphogenesis	1 (14.29%)	0	0	1
GO:0016051	carbohydrate biosynthetic process	1 (14.29%)	0	0	1
GO:0005975	carbohydrate metabolic process	1 (14.29%)	0	0	1
GO:0016049	cell growth	1 (14.29%)	0	0	1
GO:0000902	cell morphogenesis	1 (14.29%)	0	0	1
GO:0044036	cell wall macromolecule metabolic process	1 (14.29%)	0	0	1
GO:0071554	cell wall organization or biogenesis	1 (14.29%)	0	0	1
GO:0010383	cell wall polysaccharide metabolic process	1 (14.29%)	0	0	1
GO:0034637	cellular carbohydrate biosynthetic process	1 (14.29%)	0	0	1
GO:0044262	cellular carbohydrate metabolic process	1 (14.29%)	0	0	1
GO:0032989	cellular component morphogenesis	1 (14.29%)	0	0	1
GO:0016043	cellular component organization	1 (14.29%)	0	0	1
GO:0071840	cellular component organization or biogenesis	1 (14.29%)	0	0	1
GO:0048869	cellular developmental process	1 (14.29%)	0	0	1
GO:0006073	cellular glucan metabolic process	1 (14.29%)	0	0	1
GO:0033692	cellular polysaccharide biosynthetic process	1 (14.29%)	0	0	1
GO:0044264	cellular polysaccharide metabolic process	1 (14.29%)	0	0	1
GO:0071446	cellular response to salicylic acid stimulus	1 (14.29%)	0	0	1
GO:0048589	developmental growth	1 (14.29%)	0	0	1
GO:0060560	developmental growth involved in morphogenesis	1 (14.29%)	0	0	1
GO:0032502	developmental process	1 (14.29%)	0	0	1
GO:0010256	endomembrane system organization	1 (14.29%)	0	0	1
GO:0042353	fucose biosynthetic process	1 (14.29%)	0	0	1
GO:0006004	fucose metabolic process	1 (14.29%)	0	0	1
GO:0009250	glucan biosynthetic process	1 (14.29%)	0	0	1
GO:0044042	glucan metabolic process	1 (14.29%)	0	0	1
GO:0040007	growth	1 (14.29%)	0	0	1
GO:0010410	hemicellulose metabolic process	1 (14.29%)	0	0	1
GO:0019319	hexose biosynthetic process	1 (14.29%)	0	0	1
GO:0019318	hexose metabolic process	1 (14.29%)	0	0	1
GO:0061024	membrane organization	1 (14.29%)	0	0	1
GO:0046364	monosaccharide biosynthetic process	1 (14.29%)	0	0	1
GO:0005996	monosaccharide metabolic process	1 (14.29%)	0	0	1
GO:0000271	polysaccharide biosynthetic process	1 (14.29%)	0	0	1
GO:0005976	polysaccharide metabolic process	1 (14.29%)	0	0	1
GO:0009751	response to salicylic acid	1 (14.29%)	0	0	1
GO:0009863	salicylic acid mediated signaling pathway	1 (14.29%)	0	0	1
GO:0044711	single-organism biosynthetic process	1 (14.29%)	0	0	1
GO:0044723	single-organism carbohydrate metabolic process	1 (14.29%)	0	0	1
GO:0044767	single-organism developmental process	1 (14.29%)	0	0	1
GO:0044802	single-organism membrane organization	1 (14.29%)	0	0	1
GO:0044710	single-organism metabolic process	1 (14.29%)	0	0	1
GO:0009826	unidimensional cell growth	1 (14.29%)	0	0	1
GO:0009969	xyloglucan biosynthetic process	1 (14.29%)	0	0	1
GO:0010411	xyloglucan metabolic process	1 (14.29%)	0	0	1

Molecular Function (back to top)

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GO	Description	#Associated genes	egr	gma	ppe
GO:0005488	binding	6 (85.71%)	1	4	1
GO:1901363	heterocyclic compound binding	6 (85.71%)	1	4	1
GO:0097159	organic cyclic compound binding	6 (85.71%)	1	4	1
GO:0003677	DNA binding	4 (57.14%)	1	2	1
GO:0003676	nucleic acid binding	4 (57.14%)	1	2	1
GO:0001071	nucleic acid binding transcription factor activity	4 (57.14%)	1	2	1
GO:0003700	sequence-specific DNA binding transcription factor activity	4 (57.14%)	1	2	1
GO:0003824	catalytic activity	3 (42.86%)	0	2	1
GO:0016740	transferase activity	3 (42.86%)	0	2	1
GO:0005524	ATP binding	2 (28.57%)	0	2	0
GO:0030554	adenyl nucleotide binding	2 (28.57%)	0	2	0
GO:0032559	adenyl ribonucleotide binding	2 (28.57%)	0	2	0
GO:0043168	anion binding	2 (28.57%)	0	2	0
GO:0097367	carbohydrate derivative binding	2 (28.57%)	0	2	0
GO:0043167	ion binding	2 (28.57%)	0	2	0
GO:0016301	kinase activity	2 (28.57%)	0	2	0
GO:0001882	nucleoside binding	2 (28.57%)	0	2	0
GO:1901265	nucleoside phosphate binding	2 (28.57%)	0	2	0
GO:0000166	nucleotide binding	2 (28.57%)	0	2	0
GO:0016773	phosphotransferase activity, alcohol group as acceptor	2 (28.57%)	0	2	0
GO:0005515	protein binding	2 (28.57%)	0	2	0
GO:0004672	protein kinase activity	2 (28.57%)	0	2	0
GO:0001883	purine nucleoside binding	2 (28.57%)	0	2	0
GO:0017076	purine nucleotide binding	2 (28.57%)	0	2	0
GO:0032550	purine ribonucleoside binding	2 (28.57%)	0	2	0
GO:0035639	purine ribonucleoside triphosphate binding	2 (28.57%)	0	2	0
GO:0032555	purine ribonucleotide binding	2 (28.57%)	0	2	0
GO:0032549	ribonucleoside binding	2 (28.57%)	0	2	0
GO:0032553	ribonucleotide binding	2 (28.57%)	0	2	0
GO:0036094	small molecule binding	2 (28.57%)	0	2	0
GO:0016772	transferase activity, transferring phosphorus-containing groups	2 (28.57%)	0	2	0
GO:0016757	transferase activity, transferring glycosyl groups	1 (14.29%)	0	0	1

Cellular Component (back to top)

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GO	Description	#Associated genes	egr	gma	ppe
GO:0005623	cell	7 (100.00%)	1	4	2
GO:0044464	cell part	7 (100.00%)	1	4	2
GO:0005622	intracellular	5 (71.43%)	1	2	2
GO:0043231	intracellular membrane-bounded organelle	5 (71.43%)	1	2	2
GO:0043229	intracellular organelle	5 (71.43%)	1	2	2
GO:0044446	intracellular organelle part	5 (71.43%)	1	2	2
GO:0044424	intracellular part	5 (71.43%)	1	2	2
GO:0043227	membrane-bounded organelle	5 (71.43%)	1	2	2
GO:0043226	organelle	5 (71.43%)	1	2	2
GO:0044422	organelle part	5 (71.43%)	1	2	2
GO:0016602	CCAAT-binding factor complex	4 (57.14%)	1	2	1
GO:0032991	macromolecular complex	4 (57.14%)	1	2	1
GO:0044428	nuclear part	4 (57.14%)	1	2	1
GO:0044798	nuclear transcription factor complex	4 (57.14%)	1	2	1
GO:0005634	nucleus	4 (57.14%)	1	2	1
GO:0043234	protein complex	4 (57.14%)	1	2	1
GO:0005667	transcription factor complex	4 (57.14%)	1	2	1
GO:0016020	membrane	3 (42.86%)	0	2	1
GO:0030054	cell junction	2 (28.57%)	0	2	0
GO:0071944	cell periphery	2 (28.57%)	0	2	0
GO:0005911	cell-cell junction	2 (28.57%)	0	2	0
GO:0005886	plasma membrane	2 (28.57%)	0	2	0
GO:0009506	plasmodesma	2 (28.57%)	0	2	0
GO:0055044	symplast	2 (28.57%)	0	2	0
GO:0005794	Golgi apparatus	1 (14.29%)	0	0	1
GO:0044431	Golgi apparatus part	1 (14.29%)	0	0	1
GO:0000139	Golgi membrane	1 (14.29%)	0	0	1
GO:0005737	cytoplasm	1 (14.29%)	0	0	1
GO:0044444	cytoplasmic part	1 (14.29%)	0	0	1
GO:0012505	endomembrane system	1 (14.29%)	0	0	1
GO:0005768	endosome	1 (14.29%)	0	0	1
GO:0030173	integral to Golgi membrane	1 (14.29%)	0	0	1
GO:0016021	integral to membrane	1 (14.29%)	0	0	1
GO:0031301	integral to organelle membrane	1 (14.29%)	0	0	1
GO:0031228	intrinsic to Golgi membrane	1 (14.29%)	0	0	1
GO:0031224	intrinsic to membrane	1 (14.29%)	0	0	1
GO:0031300	intrinsic to organelle membrane	1 (14.29%)	0	0	1
GO:0044425	membrane part	1 (14.29%)	0	0	1
GO:0031090	organelle membrane	1 (14.29%)	0	0	1
GO:0005802	trans-Golgi network	1 (14.29%)	0	0	1